miRNA display CGI


Results 1 - 20 of 834 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21399 5' -64.1 NC_004812.1 + 62481 0.65 0.616744
Target:  5'- cGCGccucugggCCGGCGCGGaccacgcGCCCgccGGAuuCGCCCc -3'
miRNA:   3'- cUGCa-------GGCCGCGCU-------CGGG---CCU--GCGGG- -5'
21399 5' -64.1 NC_004812.1 + 14236 0.65 0.616744
Target:  5'- ----cCCGGUGCGAGgucccacCCCGGGaucgGCCCc -3'
miRNA:   3'- cugcaGGCCGCGCUC-------GGGCCUg---CGGG- -5'
21399 5' -64.1 NC_004812.1 + 56250 0.65 0.615788
Target:  5'- -uCGUCCgcgggGGCGCGccccugcgccucGCCCGcGGCgGCCCg -3'
miRNA:   3'- cuGCAGG-----CCGCGCu-----------CGGGC-CUG-CGGG- -5'
21399 5' -64.1 NC_004812.1 + 119930 0.66 0.611967
Target:  5'- uGACGgagaacgugcucuuuUCCGa-GCGGGCCuCGGAgGCCUa -3'
miRNA:   3'- -CUGC---------------AGGCcgCGCUCGG-GCCUgCGGG- -5'
21399 5' -64.1 NC_004812.1 + 77588 0.66 0.608147
Target:  5'- cGugGUaCCGGCggucGCGGGCguccCCGGccagcaGCGCCUu -3'
miRNA:   3'- -CugCA-GGCCG----CGCUCG----GGCC------UGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 130574 0.66 0.608147
Target:  5'- gGGCGUCCGGgggccccuggaCGUgGAGCCCcuccGGGCccGCCUg -3'
miRNA:   3'- -CUGCAGGCC-----------GCG-CUCGGG----CCUG--CGGG- -5'
21399 5' -64.1 NC_004812.1 + 13492 0.66 0.608147
Target:  5'- cACGUCCGucaGCGCcaGGCgCGGG-GCCCa -3'
miRNA:   3'- cUGCAGGC---CGCGc-UCGgGCCUgCGGG- -5'
21399 5' -64.1 NC_004812.1 + 24856 0.66 0.608147
Target:  5'- cGCGggCGGCGCG-GCUgcggGGGCGUCCu -3'
miRNA:   3'- cUGCagGCCGCGCuCGGg---CCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 79459 0.66 0.608147
Target:  5'- gGGCGggcugCCGGC-CGAGaCgCGG-CGCCUg -3'
miRNA:   3'- -CUGCa----GGCCGcGCUC-GgGCCuGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 32478 0.66 0.608147
Target:  5'- cGCGUgaGGCGCG-GCCCGucggcGGCGUaCCg -3'
miRNA:   3'- cUGCAggCCGCGCuCGGGC-----CUGCG-GG- -5'
21399 5' -64.1 NC_004812.1 + 76002 0.66 0.608147
Target:  5'- cGGCGUCgaacuCGGCGCGguucuccacgcGGUCCaGGGcCGCCUc -3'
miRNA:   3'- -CUGCAG-----GCCGCGC-----------UCGGG-CCU-GCGGG- -5'
21399 5' -64.1 NC_004812.1 + 38985 0.66 0.608147
Target:  5'- cGCGcCCGGCG---GCCCGcGcCGCCCc -3'
miRNA:   3'- cUGCaGGCCGCgcuCGGGC-CuGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 4245 0.66 0.608147
Target:  5'- gGGgGUCuCGaGCGUGguGGCCauGGCGCCCu -3'
miRNA:   3'- -CUgCAG-GC-CGCGC--UCGGgcCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 8084 0.66 0.608147
Target:  5'- cGCGcCCGGCG---GCCCGcGcCGCCCc -3'
miRNA:   3'- cUGCaGGCCGCgcuCGGGC-CuGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 145716 0.66 0.608147
Target:  5'- ----aCCGGCGCuga--CGGACGCCCg -3'
miRNA:   3'- cugcaGGCCGCGcucggGCCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 25179 0.66 0.608147
Target:  5'- cGCGcUCCGGgGCGGcGUCgCGGcggcucCGCCCg -3'
miRNA:   3'- cUGC-AGGCCgCGCU-CGG-GCCu-----GCGGG- -5'
21399 5' -64.1 NC_004812.1 + 34747 0.66 0.608147
Target:  5'- -cCGUCCuGGgGCGGcCCCGGG-GCCUc -3'
miRNA:   3'- cuGCAGG-CCgCGCUcGGGCCUgCGGG- -5'
21399 5' -64.1 NC_004812.1 + 84244 0.66 0.608147
Target:  5'- uGGCGUCCGacgacGCGgGAGaCCCcc-CGCCCc -3'
miRNA:   3'- -CUGCAGGC-----CGCgCUC-GGGccuGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 83523 0.66 0.608147
Target:  5'- --gGUgCUGGCgGCGAcGCuuCUGGGCGCCCc -3'
miRNA:   3'- cugCA-GGCCG-CGCU-CG--GGCCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 35146 0.66 0.608147
Target:  5'- gGGgGUCuCGaGCGUGguGGCCauGGCGCCCu -3'
miRNA:   3'- -CUgCAG-GC-CGCGC--UCGGgcCUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.