miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21401 3' -64.1 NC_004812.1 + 85376 0.65 0.605852
Target:  5'- gGACGCCgagcugugcuucgGGcGCCCGGGG-GcCGCGUu -3'
miRNA:   3'- gCUGCGG-------------CCaCGGGCUCCgC-GCGCAc -5'
21401 3' -64.1 NC_004812.1 + 105909 0.65 0.605852
Target:  5'- uCGugGCCugGGUccgucgcGCCCGAGGaGCGCc-- -3'
miRNA:   3'- -GCugCGG--CCA-------CGGGCUCCgCGCGcac -5'
21401 3' -64.1 NC_004812.1 + 45634 0.66 0.597237
Target:  5'- gGACgGCCGcGcUGCCCGcGGCGauaGCGa- -3'
miRNA:   3'- gCUG-CGGC-C-ACGGGCuCCGCg--CGCac -5'
21401 3' -64.1 NC_004812.1 + 67977 0.66 0.597237
Target:  5'- aGAUGCCGGcggcGCaCUGGGGCGcCGCc-- -3'
miRNA:   3'- gCUGCGGCCa---CG-GGCUCCGC-GCGcac -5'
21401 3' -64.1 NC_004812.1 + 72516 0.66 0.597237
Target:  5'- cCGcCGCCGGgGUCCGGgccGGCGCccGCGg- -3'
miRNA:   3'- -GCuGCGGCCaCGGGCU---CCGCG--CGCac -5'
21401 3' -64.1 NC_004812.1 + 63340 0.66 0.597237
Target:  5'- --uCGCUGGguuccugcgaccUGCCCGAGGCGUuugucGCGg- -3'
miRNA:   3'- gcuGCGGCC------------ACGGGCUCCGCG-----CGCac -5'
21401 3' -64.1 NC_004812.1 + 67247 0.66 0.597237
Target:  5'- aGcCGCCGGggacugcggcGUCUGuGGGCGCGgGUGg -3'
miRNA:   3'- gCuGCGGCCa---------CGGGC-UCCGCGCgCAC- -5'
21401 3' -64.1 NC_004812.1 + 128757 0.66 0.597237
Target:  5'- cCGGaGCCGG-GCUCGGGcgggccgcaGCGCGCGg- -3'
miRNA:   3'- -GCUgCGGCCaCGGGCUC---------CGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 75298 0.66 0.597237
Target:  5'- -cGCGCCGG-GCCaCGaAGGCGaCGUGc- -3'
miRNA:   3'- gcUGCGGCCaCGG-GC-UCCGC-GCGCac -5'
21401 3' -64.1 NC_004812.1 + 62347 0.66 0.597237
Target:  5'- gCGGCGCgc--GCCCGcGGCGCGUGg- -3'
miRNA:   3'- -GCUGCGgccaCGGGCuCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 1 0.66 0.597237
Target:  5'- -GAC-CCGGgcccuccCCCGGcGGCGCGCGc- -3'
miRNA:   3'- gCUGcGGCCac-----GGGCU-CCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 54554 0.66 0.597237
Target:  5'- gCGACuCCGacgGCgCCGGGGCGcCGCGg- -3'
miRNA:   3'- -GCUGcGGCca-CG-GGCUCCGC-GCGCac -5'
21401 3' -64.1 NC_004812.1 + 102170 0.66 0.597237
Target:  5'- cCGuCGUCGGggGCCCGcGGCGgGCc-- -3'
miRNA:   3'- -GCuGCGGCCa-CGGGCuCCGCgCGcac -5'
21401 3' -64.1 NC_004812.1 + 44409 0.66 0.597237
Target:  5'- gGGCGUgGauaGCCCGGGGCGCcggGCGg- -3'
miRNA:   3'- gCUGCGgCca-CGGGCUCCGCG---CGCac -5'
21401 3' -64.1 NC_004812.1 + 22654 0.66 0.597237
Target:  5'- gGGCucCCGcGUGCCCGGGGCcgGCGgGa- -3'
miRNA:   3'- gCUGc-GGC-CACGGGCUCCG--CGCgCac -5'
21401 3' -64.1 NC_004812.1 + 3249 0.66 0.597237
Target:  5'- cCGGaGCCGG-GCUCGGGcgggccgcaGCGCGCGg- -3'
miRNA:   3'- -GCUgCGGCCaCGGGCUC---------CGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 37586 0.66 0.593415
Target:  5'- aGACggGCCGGUGgccgcccgcguucaCCCGGcagucccGGUGCGCGUc -3'
miRNA:   3'- gCUG--CGGCCAC--------------GGGCU-------CCGCGCGCAc -5'
21401 3' -64.1 NC_004812.1 + 30725 0.66 0.588642
Target:  5'- gGACGCCacggcguccgcgcaGGUgucgagcuccacgauGCCCGGGGC-CGCGg- -3'
miRNA:   3'- gCUGCGG--------------CCA---------------CGGGCUCCGcGCGCac -5'
21401 3' -64.1 NC_004812.1 + 100906 0.66 0.587688
Target:  5'- cCGAgCGCgGGUGC---AGGCGCGCGc- -3'
miRNA:   3'- -GCU-GCGgCCACGggcUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 48319 0.66 0.587688
Target:  5'- cCGACGCCGc-GgCCGAGGC-CGCa-- -3'
miRNA:   3'- -GCUGCGGCcaCgGGCUCCGcGCGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.