miRNA display CGI


Results 1 - 20 of 359 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21401 5' -56.3 NC_004812.1 + 58507 0.66 0.922882
Target:  5'- gCCAUGUaguACAUGgccAGCUCgcugauguuguuGGGGGCg -3'
miRNA:   3'- aGGUGCA---UGUGCaucUCGAG------------CCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 90649 0.66 0.922882
Target:  5'- cCCACGUguggcagaGCACGUucGuGCUCGuGGugcGGCg -3'
miRNA:   3'- aGGUGCA--------UGUGCAu-CuCGAGC-CC---CCG- -5'
21401 5' -56.3 NC_004812.1 + 106661 0.66 0.922882
Target:  5'- aUCCACaaGCGCGUGGAgGUUCcGGccGGCg -3'
miRNA:   3'- -AGGUGcaUGUGCAUCU-CGAGcCC--CCG- -5'
21401 5' -56.3 NC_004812.1 + 36144 0.66 0.922882
Target:  5'- cCCACGgguugGC-CGUGGcGGCgcaGGGGuGCg -3'
miRNA:   3'- aGGUGCa----UGuGCAUC-UCGag-CCCC-CG- -5'
21401 5' -56.3 NC_004812.1 + 94644 0.66 0.922882
Target:  5'- gCgACGaggGCGCGggcgcGAGCUCGGGaacgacGGCg -3'
miRNA:   3'- aGgUGCa--UGUGCau---CUCGAGCCC------CCG- -5'
21401 5' -56.3 NC_004812.1 + 30034 0.66 0.922882
Target:  5'- cCCACaUGCACG--GGGCgacgCaGGGGCa -3'
miRNA:   3'- aGGUGcAUGUGCauCUCGa---GcCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 72219 0.66 0.922882
Target:  5'- gUCCGCGgccuCGCGgacugcggcGGGGCguccggUCGGcGGGCg -3'
miRNA:   3'- -AGGUGCau--GUGCa--------UCUCG------AGCC-CCCG- -5'
21401 5' -56.3 NC_004812.1 + 58129 0.66 0.922882
Target:  5'- uUCCGCGUGCG-GUcaaagauGAGCagCGGGcaGGCg -3'
miRNA:   3'- -AGGUGCAUGUgCAu------CUCGa-GCCC--CCG- -5'
21401 5' -56.3 NC_004812.1 + 145730 0.66 0.922882
Target:  5'- gUCCGCGUccaGCGCccgcGGgUCGGGGGg -3'
miRNA:   3'- -AGGUGCA---UGUGcaucUCgAGCCCCCg -5'
21401 5' -56.3 NC_004812.1 + 48944 0.66 0.922882
Target:  5'- cUUgGCGccgACGCGgcGAGcCUCGacGGGGCc -3'
miRNA:   3'- -AGgUGCa--UGUGCauCUC-GAGC--CCCCG- -5'
21401 5' -56.3 NC_004812.1 + 118521 0.66 0.922882
Target:  5'- aCCGCGUuucgggacGCGCGgggccUGGAGCUCagcguGGGucGGCa -3'
miRNA:   3'- aGGUGCA--------UGUGC-----AUCUCGAG-----CCC--CCG- -5'
21401 5' -56.3 NC_004812.1 + 98290 0.66 0.922882
Target:  5'- -aUACGUGCucguCGUccGGGGCUCcGGcGGCg -3'
miRNA:   3'- agGUGCAUGu---GCA--UCUCGAGcCC-CCG- -5'
21401 5' -56.3 NC_004812.1 + 135874 0.66 0.922882
Target:  5'- aCCACccACAgGUGGuacagacgGGggCGGGGGCg -3'
miRNA:   3'- aGGUGcaUGUgCAUC--------UCgaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 135062 0.66 0.922882
Target:  5'- cUCGUGUACAUGgacGGGGC--GGGGGCg -3'
miRNA:   3'- aGGUGCAUGUGCa--UCUCGagCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 102157 0.66 0.922882
Target:  5'- cUCCGCGUcgGCcccguCGUcgGGGGCccgCGGcGGGCc -3'
miRNA:   3'- -AGGUGCA--UGu----GCA--UCUCGa--GCC-CCCG- -5'
21401 5' -56.3 NC_004812.1 + 34839 0.66 0.922882
Target:  5'- gUCCugGgcgcucaGgGCGaAGAGC-CGGGGGa -3'
miRNA:   3'- -AGGugCa------UgUGCaUCUCGaGCCCCCg -5'
21401 5' -56.3 NC_004812.1 + 96437 0.66 0.922882
Target:  5'- uUCC-CGaGgGgGUGGAGCUgcaguggcugcUGGGGGCc -3'
miRNA:   3'- -AGGuGCaUgUgCAUCUCGA-----------GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 59689 0.66 0.922338
Target:  5'- gCCGCGcGCGCGagggAGAGCggCGGcgagcggcgaggcGGGCc -3'
miRNA:   3'- aGGUGCaUGUGCa---UCUCGa-GCC-------------CCCG- -5'
21401 5' -56.3 NC_004812.1 + 43986 0.66 0.921792
Target:  5'- cCCGCGgucgcccgaccgGC-CGgccuccucGGAGC-CGGGGGCg -3'
miRNA:   3'- aGGUGCa-----------UGuGCa-------UCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 133960 0.66 0.919024
Target:  5'- cCCA-GUACACGUcGAGCgugucgcUCgcgcggaugcuguacGGGGGCg -3'
miRNA:   3'- aGGUgCAUGUGCAuCUCG-------AG---------------CCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.