miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21402 3' -58.2 NC_004812.1 + 12288 0.66 0.827563
Target:  5'- -cGggGGGGcGGAGCgaaacccacgacgGCCucagcgacccgcaGGCCGCCa -3'
miRNA:   3'- uuCuuCCCCaUCUCG-------------UGGc------------UCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 143949 0.66 0.826725
Target:  5'- gGGGgcGGGGUgggaGGAGCGCgGGaugggcauuuaaggcGCCGaCCg -3'
miRNA:   3'- -UUCuuCCCCA----UCUCGUGgCU---------------CGGC-GG- -5'
21402 3' -58.2 NC_004812.1 + 86722 0.66 0.826725
Target:  5'- gGAGGAGcGGccGGAcgacgacggcgaccaGCGCCGGGCCGaCCc -3'
miRNA:   3'- -UUCUUC-CCcaUCU---------------CGUGGCUCGGC-GG- -5'
21402 3' -58.2 NC_004812.1 + 72128 0.66 0.823356
Target:  5'- uGGAGGcGGGUcgggAGGGUGCgGGGCCGg- -3'
miRNA:   3'- uUCUUC-CCCA----UCUCGUGgCUCGGCgg -5'
21402 3' -58.2 NC_004812.1 + 119497 0.66 0.823356
Target:  5'- cGGcAGGGGc--GGCGuCCGcgGGCCGCCg -3'
miRNA:   3'- uUCuUCCCCaucUCGU-GGC--UCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 1837 0.66 0.823356
Target:  5'- gGGGGAGGGGacaugcugaugAGAGCccGCCGggGGCCuCCa -3'
miRNA:   3'- -UUCUUCCCCa----------UCUCG--UGGC--UCGGcGG- -5'
21402 3' -58.2 NC_004812.1 + 44317 0.66 0.823356
Target:  5'- -cGGAGaGGG-AGGGCACgGGGCgGUg -3'
miRNA:   3'- uuCUUC-CCCaUCUCGUGgCUCGgCGg -5'
21402 3' -58.2 NC_004812.1 + 117648 0.66 0.823356
Target:  5'- -cGgcGGGGUcgcGGGCcgGCCGGG-CGCCg -3'
miRNA:   3'- uuCuuCCCCAu--CUCG--UGGCUCgGCGG- -5'
21402 3' -58.2 NC_004812.1 + 7720 0.66 0.823356
Target:  5'- cGGcGGGGGUcuccGCGCCGGGCgagGCCg -3'
miRNA:   3'- uUCuUCCCCAucu-CGUGGCUCGg--CGG- -5'
21402 3' -58.2 NC_004812.1 + 27660 0.66 0.823356
Target:  5'- cAGGgcGGGGUucaccuGAaaCACCGGGCUGCa -3'
miRNA:   3'- -UUCuuCCCCAu-----CUc-GUGGCUCGGCGg -5'
21402 3' -58.2 NC_004812.1 + 150398 0.66 0.823356
Target:  5'- cGGcAGGGGc--GGCGuCCGcgGGCCGCCg -3'
miRNA:   3'- uUCuUCCCCaucUCGU-GGC--UCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 105558 0.66 0.823356
Target:  5'- -cGAcGGGGaGGGGC-CUG-GCUGCCg -3'
miRNA:   3'- uuCUuCCCCaUCUCGuGGCuCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 32738 0.66 0.823356
Target:  5'- gGGGGAGGGGacaugcugaugAGAGCccGCCGggGGCCuCCa -3'
miRNA:   3'- -UUCUUCCCCa----------UCUCG--UGGC--UCGGcGG- -5'
21402 3' -58.2 NC_004812.1 + 136446 0.66 0.823356
Target:  5'- -----cGGGUcGGGGC-CCGAgcGCCGCCg -3'
miRNA:   3'- uucuucCCCA-UCUCGuGGCU--CGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 100468 0.66 0.823356
Target:  5'- ----cGGGcGUAGAGgGgCGcGGCCGCCc -3'
miRNA:   3'- uucuuCCC-CAUCUCgUgGC-UCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 38621 0.66 0.823356
Target:  5'- cGGcGGGGGUcuccGCGCCGGGCgagGCCg -3'
miRNA:   3'- uUCuUCCCCAucu-CGUGGCUCGg--CGG- -5'
21402 3' -58.2 NC_004812.1 + 84353 0.66 0.823356
Target:  5'- cGGAAgcGGGGUGcGGUGgCGGGCCgGCCc -3'
miRNA:   3'- uUCUU--CCCCAUcUCGUgGCUCGG-CGG- -5'
21402 3' -58.2 NC_004812.1 + 66954 0.66 0.823356
Target:  5'- gAGGAuguccuucuGGGGGaAGAGCcCCGAGa-GCCc -3'
miRNA:   3'- -UUCU---------UCCCCaUCUCGuGGCUCggCGG- -5'
21402 3' -58.2 NC_004812.1 + 148549 0.66 0.823356
Target:  5'- -cGgcGGGGUcgcGGGCcgGCCGGG-CGCCg -3'
miRNA:   3'- uuCuuCCCCAu--CUCG--UGGCUCgGCGG- -5'
21402 3' -58.2 NC_004812.1 + 95560 0.66 0.823356
Target:  5'- -cGgcGGGGUcGAGCgggcuaACCGcacGGCCGCg -3'
miRNA:   3'- uuCuuCCCCAuCUCG------UGGC---UCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.