miRNA display CGI


Results 1 - 20 of 500 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21403 5' -61.6 NC_004812.1 + 151091 0.66 0.707487
Target:  5'- gGGGAGGaCGGCggggacgccuuccccGCGGCcGccgCCGCCg -3'
miRNA:   3'- gCCCUCC-GCCG---------------CGUCGaCua-GGUGGg -5'
21403 5' -61.6 NC_004812.1 + 25583 0.66 0.707487
Target:  5'- gGGGAGGaCGGCggggacgccuuccccGCGGCcGccgCCGCCg -3'
miRNA:   3'- gCCCUCC-GCCG---------------CGUCGaCua-GGUGGg -5'
21403 5' -61.6 NC_004812.1 + 83377 0.66 0.703646
Target:  5'- aGGGcGGCGGCGguccgcaGGCcGG-CCGCCUc -3'
miRNA:   3'- gCCCuCCGCCGCg------UCGaCUaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 98305 0.66 0.703646
Target:  5'- cCGGGGcuccGGCGGCGCGcggguGCUGGcUCGCg- -3'
miRNA:   3'- -GCCCU----CCGCCGCGU-----CGACUaGGUGgg -5'
21403 5' -61.6 NC_004812.1 + 148427 0.66 0.703646
Target:  5'- gCGGG-GGCGGagcgugggguCGCGGUgaGUCCcucGCCCg -3'
miRNA:   3'- -GCCCuCCGCC----------GCGUCGacUAGG---UGGG- -5'
21403 5' -61.6 NC_004812.1 + 124489 0.66 0.703646
Target:  5'- gGGGAGGagccccCGCGGCg---CCGCCCc -3'
miRNA:   3'- gCCCUCCgcc---GCGUCGacuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 66502 0.66 0.703646
Target:  5'- aGGGcgucuGGGCGaGCGCGGCgaacacgccgcGGUaCCGCUCg -3'
miRNA:   3'- gCCC-----UCCGC-CGCGUCGa----------CUA-GGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 31236 0.66 0.703646
Target:  5'- uCGGGAGGUGcguccaCGC-GCUcg-CCACCCu -3'
miRNA:   3'- -GCCCUCCGCc-----GCGuCGAcuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 20676 0.66 0.703646
Target:  5'- gCGaGGAGGUGGCGgAcGCcg--CCGCCUg -3'
miRNA:   3'- -GC-CCUCCGCCGCgU-CGacuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 29744 0.66 0.703646
Target:  5'- gCGGGccgagGGGgGGCGCGGCgGA--CGCCa -3'
miRNA:   3'- -GCCC-----UCCgCCGCGUCGaCUagGUGGg -5'
21403 5' -61.6 NC_004812.1 + 155390 0.66 0.703646
Target:  5'- gGGGAGGagccccCGCGGCg---CCGCCCc -3'
miRNA:   3'- gCCCUCCgcc---GCGUCGacuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 130999 0.66 0.703646
Target:  5'- gGGGAcacGGCGGCgGCGGCgg--CCGCg- -3'
miRNA:   3'- gCCCU---CCGCCG-CGUCGacuaGGUGgg -5'
21403 5' -61.6 NC_004812.1 + 155252 0.66 0.703646
Target:  5'- gCGGGccgagGGGgGGCGCGGCgGA--CGCCa -3'
miRNA:   3'- -GCCC-----UCCgCCGCGUCGaCUagGUGGg -5'
21403 5' -61.6 NC_004812.1 + 151696 0.66 0.703646
Target:  5'- cCGGGccgcagcgagcGGCGGCGCGcGC-GcgCCGCCg -3'
miRNA:   3'- -GCCCu----------CCGCCGCGU-CGaCuaGGUGGg -5'
21403 5' -61.6 NC_004812.1 + 5491 0.66 0.703646
Target:  5'- gGGGAcacGGCGGCgGCGGCgg--CCGCg- -3'
miRNA:   3'- gCCCU---CCGCCG-CGUCGacuaGGUGgg -5'
21403 5' -61.6 NC_004812.1 + 153091 0.66 0.703646
Target:  5'- uGGGucugguGGGCGG-GCuGuCUGGgcgCCGCCCc -3'
miRNA:   3'- gCCC------UCCGCCgCGuC-GACUa--GGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 335 0.66 0.703646
Target:  5'- uCGGGAGGUGcguccaCGC-GCUcg-CCACCCu -3'
miRNA:   3'- -GCCCUCCGCc-----GCGuCGAcuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 122190 0.66 0.703646
Target:  5'- uGGGucugguGGGCGG-GCuGuCUGGgcgCCGCCCc -3'
miRNA:   3'- gCCC------UCCGCCgCGuC-GACUa--GGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 105289 0.66 0.701722
Target:  5'- gCGGGccuGGCcugGGCGUagGGCUGcccguacggggCCGCCCg -3'
miRNA:   3'- -GCCCu--CCG---CCGCG--UCGACua---------GGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 44449 0.66 0.701722
Target:  5'- uCGGaGAGGCggagcaugccgcgGGCGCGGgUGGUUUcggugaaggcaaaGCCCg -3'
miRNA:   3'- -GCC-CUCCG-------------CCGCGUCgACUAGG-------------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.