miRNA display CGI


Results 1 - 20 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21405 3' -55.7 NC_004812.1 + 57963 0.66 0.921379
Target:  5'- gCGUGC-GCGCgucgcGCCcGGGCGcaGCGcGGCc -3'
miRNA:   3'- -GUACGuCGCGa----UGGaCCUGU--UGC-CCG- -5'
21405 3' -55.7 NC_004812.1 + 124159 0.66 0.921379
Target:  5'- uGUGcCGGCacuuCUGCCgguacgugGGGCGGCuGGGCg -3'
miRNA:   3'- gUAC-GUCGc---GAUGGa-------CCUGUUG-CCCG- -5'
21405 3' -55.7 NC_004812.1 + 5334 0.66 0.921379
Target:  5'- --cGgGGCGCcGCCcgGGGuCGGCGGGg -3'
miRNA:   3'- guaCgUCGCGaUGGa-CCU-GUUGCCCg -5'
21405 3' -55.7 NC_004812.1 + 100647 0.66 0.921379
Target:  5'- --gGCGGCGCgaGCCgcgccGGGC--CGGGCc -3'
miRNA:   3'- guaCGUCGCGa-UGGa----CCUGuuGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 32398 0.66 0.921379
Target:  5'- gGUGCGcCGCgGCCUcGGuCGccgccGCGGGCg -3'
miRNA:   3'- gUACGUcGCGaUGGA-CCuGU-----UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 74293 0.66 0.921379
Target:  5'- uCcgGCucauGGCGCUcGCCcGGGCuccgcgcGCGGGCc -3'
miRNA:   3'- -GuaCG----UCGCGA-UGGaCCUGu------UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 65121 0.66 0.921379
Target:  5'- --cGCGGCccCUGCCggucggucUGGACGccuuCGGGCg -3'
miRNA:   3'- guaCGUCGc-GAUGG--------ACCUGUu---GCCCG- -5'
21405 3' -55.7 NC_004812.1 + 107156 0.66 0.921379
Target:  5'- ---cCAGCGCcGCCUGG----CGGGCa -3'
miRNA:   3'- guacGUCGCGaUGGACCuguuGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 136471 0.66 0.921379
Target:  5'- --cGCGGgGgcGCCaUGGGCGacGCGGGCc -3'
miRNA:   3'- guaCGUCgCgaUGG-ACCUGU--UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 11318 0.66 0.921379
Target:  5'- --cGCGGgGCggggGCC-GGugGGCuGGGCc -3'
miRNA:   3'- guaCGUCgCGa---UGGaCCugUUG-CCCG- -5'
21405 3' -55.7 NC_004812.1 + 130842 0.66 0.921379
Target:  5'- --cGgGGCGCcGCCcgGGGuCGGCGGGg -3'
miRNA:   3'- guaCgUCGCGaUGGa-CCU-GUUGCCCg -5'
21405 3' -55.7 NC_004812.1 + 9768 0.66 0.921379
Target:  5'- --cGCGGCGC-GCCgGcGGCcgcGCGGGUg -3'
miRNA:   3'- guaCGUCGCGaUGGaC-CUGu--UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 45711 0.66 0.921379
Target:  5'- --cGCcgGGCGCUcAUCgGGACGgccugccgccggGCGGGCu -3'
miRNA:   3'- guaCG--UCGCGA-UGGaCCUGU------------UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 59170 0.66 0.921379
Target:  5'- aCcgGCGGCucagcaGCUGCa---GCAGCGGGCa -3'
miRNA:   3'- -GuaCGUCG------CGAUGgaccUGUUGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 19385 0.66 0.921379
Target:  5'- --cGCGGaCGUccagcaggGCCaGGACGGCGGGg -3'
miRNA:   3'- guaCGUC-GCGa-------UGGaCCUGUUGCCCg -5'
21405 3' -55.7 NC_004812.1 + 131448 0.66 0.921379
Target:  5'- --gGCGGUGCUcgGCCuUGGAC--CGGGa -3'
miRNA:   3'- guaCGUCGCGA--UGG-ACCUGuuGCCCg -5'
21405 3' -55.7 NC_004812.1 + 134918 0.66 0.920819
Target:  5'- -uUGCcGCGUUcgauuggACCUcGGACGAgGGGUc -3'
miRNA:   3'- guACGuCGCGA-------UGGA-CCUGUUgCCCG- -5'
21405 3' -55.7 NC_004812.1 + 118992 0.66 0.91969
Target:  5'- --aGCAGCuggacgcgcaccggGaCUGCCgGGugAacGCGGGCg -3'
miRNA:   3'- guaCGUCG--------------C-GAUGGaCCugU--UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 76505 0.66 0.91969
Target:  5'- -cUGuCGGCcgaggccgucgacgGCUGCCUGGuCGA-GGGCg -3'
miRNA:   3'- guAC-GUCG--------------CGAUGGACCuGUUgCCCG- -5'
21405 3' -55.7 NC_004812.1 + 89549 0.66 0.917978
Target:  5'- --gGCGGCGg-ACCcGGAggcucagcccgacgaCGGCGGGCg -3'
miRNA:   3'- guaCGUCGCgaUGGaCCU---------------GUUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.