miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21405 5' -65.9 NC_004812.1 + 108002 0.66 0.492822
Target:  5'- cACGCGCGUcGUCCGgauggccgcGGCCGCGUcgccgccggUGGa -3'
miRNA:   3'- -UGCGCGCAcCGGGC---------CCGGUGCG---------ACCa -5'
21405 5' -65.9 NC_004812.1 + 21614 0.66 0.492822
Target:  5'- cCGgGCGagucGGCCCGgcggcgcucGGCCGaGCUGGUg -3'
miRNA:   3'- uGCgCGCa---CCGGGC---------CCGGUgCGACCA- -5'
21405 5' -65.9 NC_004812.1 + 128733 0.66 0.492822
Target:  5'- gGCGCGCGgcGGCcgaaggcgcggCCGGaGCCGgGCUcGGg -3'
miRNA:   3'- -UGCGCGCa-CCG-----------GGCC-CGGUgCGA-CCa -5'
21405 5' -65.9 NC_004812.1 + 82771 0.66 0.492822
Target:  5'- gACGCGCGa-GUUCGGGUgcCGCUGGg -3'
miRNA:   3'- -UGCGCGCacCGGGCCCGguGCGACCa -5'
21405 5' -65.9 NC_004812.1 + 100314 0.66 0.492822
Target:  5'- cUGCGCGUgcuggaccaGGCCCucgagcGGGCCGcCGCgGGc -3'
miRNA:   3'- uGCGCGCA---------CCGGG------CCCGGU-GCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 142186 0.66 0.492822
Target:  5'- gGCGCGC-UGG-CCGGcGCgGgGCUGGc -3'
miRNA:   3'- -UGCGCGcACCgGGCC-CGgUgCGACCa -5'
21405 5' -65.9 NC_004812.1 + 108373 0.66 0.492822
Target:  5'- cCGCGCugcaggaGGCCCuGGGCCGCGg-GGc -3'
miRNA:   3'- uGCGCGca-----CCGGG-CCCGGUGCgaCCa -5'
21405 5' -65.9 NC_004812.1 + 92763 0.66 0.492822
Target:  5'- gGCGCGgGccGCCCGcGGCguucauguCGCUGGUg -3'
miRNA:   3'- -UGCGCgCacCGGGC-CCGgu------GCGACCA- -5'
21405 5' -65.9 NC_004812.1 + 107419 0.66 0.492822
Target:  5'- -gGUGCGgccaGGCCCaccGGCCGCGCggcGGc -3'
miRNA:   3'- ugCGCGCa---CCGGGc--CCGGUGCGa--CCa -5'
21405 5' -65.9 NC_004812.1 + 72186 0.66 0.492822
Target:  5'- -gGUGCGgccgggGGcCCCGGGUCGuCGCgGGg -3'
miRNA:   3'- ugCGCGCa-----CC-GGGCCCGGU-GCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 95596 0.66 0.491923
Target:  5'- cGCGCGCGggcgcGGCagcagcaacggcaCCGGGCCGgGCUc-- -3'
miRNA:   3'- -UGCGCGCa----CCG-------------GGCCCGGUgCGAcca -5'
21405 5' -65.9 NC_004812.1 + 137813 0.66 0.491923
Target:  5'- gGCGcCGCGgagcaGGCCCccuGGCCccgggagguccugGCGCUGGc -3'
miRNA:   3'- -UGC-GCGCa----CCGGGc--CCGG-------------UGCGACCa -5'
21405 5' -65.9 NC_004812.1 + 81831 0.66 0.48923
Target:  5'- -gGCGCGggaagucgccggaGGCCCucgGGGCCGCGCg--- -3'
miRNA:   3'- ugCGCGCa------------CCGGG---CCCGGUGCGacca -5'
21405 5' -65.9 NC_004812.1 + 136294 0.66 0.483866
Target:  5'- gACGCGuCGcGGcCCCGGGC---GCUGGa -3'
miRNA:   3'- -UGCGC-GCaCC-GGGCCCGgugCGACCa -5'
21405 5' -65.9 NC_004812.1 + 128085 0.66 0.483866
Target:  5'- cACGgGCGUgucgGGCCCGaGGCgcgugCGCGCgcGGUa -3'
miRNA:   3'- -UGCgCGCA----CCGGGC-CCG-----GUGCGa-CCA- -5'
21405 5' -65.9 NC_004812.1 + 152190 0.66 0.483866
Target:  5'- cCGCGcCGUGccgcaCCUGGGCUACGCcaUGGc -3'
miRNA:   3'- uGCGC-GCACc----GGGCCCGGUGCG--ACCa -5'
21405 5' -65.9 NC_004812.1 + 48671 0.66 0.483866
Target:  5'- cCGCGCGaUGGCCggccuccuCGGGgCGCucugugGCUGGg -3'
miRNA:   3'- uGCGCGC-ACCGG--------GCCCgGUG------CGACCa -5'
21405 5' -65.9 NC_004812.1 + 116118 0.66 0.483866
Target:  5'- cCGCGCccgcccucggGGCCCGGGCCcCGa-GGg -3'
miRNA:   3'- uGCGCGca--------CCGGGCCCGGuGCgaCCa -5'
21405 5' -65.9 NC_004812.1 + 26682 0.66 0.483866
Target:  5'- cCGCGcCGUGccgcaCCUGGGCUACGCcaUGGc -3'
miRNA:   3'- uGCGC-GCACc----GGGCCCGGUGCG--ACCa -5'
21405 5' -65.9 NC_004812.1 + 2577 0.66 0.483866
Target:  5'- cACGgGCGUgucgGGCCCGaGGCgcgugCGCGCgcGGUa -3'
miRNA:   3'- -UGCgCGCA----CCGGGC-CCG-----GUGCGa-CCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.