miRNA display CGI


Results 1 - 20 of 610 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21406 3' -62.4 NC_004812.1 + 107604 0.66 0.687417
Target:  5'- cGCGugGGCCCG-GCCgCCGggguucaCGucuGCGGc -3'
miRNA:   3'- -CGCugCCGGGCgUGG-GGCa------GCu--CGUC- -5'
21406 3' -62.4 NC_004812.1 + 54747 0.66 0.687417
Target:  5'- gGCG-CgGGgCCGCAuCCCCGcggcgcgCGGGCGGc -3'
miRNA:   3'- -CGCuG-CCgGGCGU-GGGGCa------GCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 67379 0.66 0.687417
Target:  5'- cGUGGCGGCgCGgGCCuCCGcCGccgcGCGGa -3'
miRNA:   3'- -CGCUGCCGgGCgUGG-GGCaGCu---CGUC- -5'
21406 3' -62.4 NC_004812.1 + 98221 0.66 0.687417
Target:  5'- gGCGGCGGCCgccUGguCUCCG-CgGGGCGGc -3'
miRNA:   3'- -CGCUGCCGG---GCguGGGGCaG-CUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 105910 0.66 0.687417
Target:  5'- cGUGGCcugGGUCCGuCGCgCCCGagGAGCGc -3'
miRNA:   3'- -CGCUG---CCGGGC-GUG-GGGCagCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 136063 0.66 0.687417
Target:  5'- aGCGgcGCGGCCaCGCGCCgcaggUCGgcCGAGCGc -3'
miRNA:   3'- -CGC--UGCCGG-GCGUGG-----GGCa-GCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 135008 0.66 0.687417
Target:  5'- cCGACucGCCCGguCCCCGUCGcGagaaAGa -3'
miRNA:   3'- cGCUGc-CGGGCguGGGGCAGCuCg---UC- -5'
21406 3' -62.4 NC_004812.1 + 136383 0.66 0.687417
Target:  5'- cCGGCGG-CCGCGCUagCCGUugCGGGCGc -3'
miRNA:   3'- cGCUGCCgGGCGUGG--GGCA--GCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 86653 0.66 0.687417
Target:  5'- uCGAUGGgCCGgGCCUCGUUGA-CGGc -3'
miRNA:   3'- cGCUGCCgGGCgUGGGGCAGCUcGUC- -5'
21406 3' -62.4 NC_004812.1 + 142418 0.66 0.687417
Target:  5'- -gGACGGCcggaacgaguuCCGCGCCCUGgCGAcGCuGg -3'
miRNA:   3'- cgCUGCCG-----------GGCGUGGGGCaGCU-CGuC- -5'
21406 3' -62.4 NC_004812.1 + 93468 0.66 0.687417
Target:  5'- cGCGGCGGCUCcCccucCCCCGggggcCGAGgAGg -3'
miRNA:   3'- -CGCUGCCGGGcGu---GGGGCa----GCUCgUC- -5'
21406 3' -62.4 NC_004812.1 + 94529 0.66 0.687417
Target:  5'- gGgGACcucgGGgCCGcCGCCCUGUCG-GCGGc -3'
miRNA:   3'- -CgCUG----CCgGGC-GUGGGGCAGCuCGUC- -5'
21406 3' -62.4 NC_004812.1 + 68607 0.66 0.687417
Target:  5'- uCGA-GGaCCUGaC-CCCCGUCGAGCuGg -3'
miRNA:   3'- cGCUgCC-GGGC-GuGGGGCAGCUCGuC- -5'
21406 3' -62.4 NC_004812.1 + 122459 0.66 0.687417
Target:  5'- gGCGGgGGCgCggGCGCCCCuggCGGGCGc -3'
miRNA:   3'- -CGCUgCCGgG--CGUGGGGca-GCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 104012 0.66 0.687417
Target:  5'- -aGGCGGCCCGUggcguacgGCCucggggCCGUCGcGGCGu -3'
miRNA:   3'- cgCUGCCGGGCG--------UGG------GGCAGC-UCGUc -5'
21406 3' -62.4 NC_004812.1 + 80478 0.66 0.687417
Target:  5'- gGCGACGcGgCgGCGCgCCGaCGAGCu- -3'
miRNA:   3'- -CGCUGC-CgGgCGUGgGGCaGCUCGuc -5'
21406 3' -62.4 NC_004812.1 + 109780 0.66 0.687417
Target:  5'- cUGACGGCCCccucgaccGgGCCgacggCCGcCGGGCAGa -3'
miRNA:   3'- cGCUGCCGGG--------CgUGG-----GGCaGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 153360 0.66 0.687417
Target:  5'- gGCGGgGGCgCggGCGCCCCuggCGGGCGc -3'
miRNA:   3'- -CGCUgCCGgG--CGUGGGGca-GCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 32857 0.66 0.687417
Target:  5'- -gGGCGGCCagcgGCACCCCGgaggcCGccAGaCAGg -3'
miRNA:   3'- cgCUGCCGGg---CGUGGGGCa----GC--UC-GUC- -5'
21406 3' -62.4 NC_004812.1 + 145313 0.66 0.686459
Target:  5'- cGCGGCGcCCCGCgcggcgcGCCUCGU-GGGCGu -3'
miRNA:   3'- -CGCUGCcGGGCG-------UGGGGCAgCUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.