miRNA display CGI


Results 1 - 20 of 480 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21407 5' -59.1 NC_004812.1 + 152688 0.65 0.843849
Target:  5'- gCGaGGGCGCUugggcccucgcguGGcGGGGGcgGCCUCGg -3'
miRNA:   3'- gGC-CCUGCGG-------------UCuUCCCCuuUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 58763 0.65 0.843849
Target:  5'- gCCGGcGGCGCCcggcgAGcGAGGGcGcggugggcuuuccGGGCCCCGg -3'
miRNA:   3'- -GGCC-CUGCGG-----UC-UUCCC-C-------------UUUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 12377 0.65 0.843849
Target:  5'- cCCGGccgcGCgGCCGGGAGGGcGAagagccgAACCUCGu -3'
miRNA:   3'- -GGCCc---UG-CGGUCUUCCC-CU-------UUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 59760 0.65 0.842292
Target:  5'- cCCGGGguccccuuuuugugGgGCCGGuGGGGGcgGCgCCCu -3'
miRNA:   3'- -GGCCC--------------UgCGGUCuUCCCCuuUG-GGGc -5'
21407 5' -59.1 NC_004812.1 + 90889 0.66 0.836788
Target:  5'- uCCGGGACGgucacgagcuCCGGcGGGGuGAGgAUCUCGg -3'
miRNA:   3'- -GGCCCUGC----------GGUCuUCCC-CUU-UGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 78981 0.66 0.836788
Target:  5'- aCCGGGgggcgguuuacaGCGCCaaggcgcugcuGGccGGGGAcGCCCgCGa -3'
miRNA:   3'- -GGCCC------------UGCGG-----------UCuuCCCCUuUGGG-GC- -5'
21407 5' -59.1 NC_004812.1 + 70329 0.66 0.836788
Target:  5'- gCCGGGGCaggggucgGCgAGucGGGGguGCUUCGg -3'
miRNA:   3'- -GGCCCUG--------CGgUCuuCCCCuuUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 1289 0.66 0.836788
Target:  5'- cCCaGGGuCcCCGGAGGcGGGGcgccGACCCCc -3'
miRNA:   3'- -GG-CCCuGcGGUCUUC-CCCU----UUGGGGc -5'
21407 5' -59.1 NC_004812.1 + 93486 0.66 0.836788
Target:  5'- cCCGGGG-GCCgaGGAGGGcGGAGAgCggCCGg -3'
miRNA:   3'- -GGCCCUgCGG--UCUUCC-CCUUUgG--GGC- -5'
21407 5' -59.1 NC_004812.1 + 44114 0.66 0.836788
Target:  5'- uCUGGGuCGUCGGGuccGGGGGAGCgCgCGc -3'
miRNA:   3'- -GGCCCuGCGGUCUu--CCCCUUUGgG-GC- -5'
21407 5' -59.1 NC_004812.1 + 146258 0.66 0.836788
Target:  5'- cCCGGGGCGCgacgCGGcGAGGcGGcGAACCgCGc -3'
miRNA:   3'- -GGCCCUGCG----GUC-UUCC-CC-UUUGGgGC- -5'
21407 5' -59.1 NC_004812.1 + 34729 0.66 0.836788
Target:  5'- aCCGGcagccgccGAuCGCCGuccuGGGGcgGCCCCGg -3'
miRNA:   3'- -GGCC--------CU-GCGGUcuu-CCCCuuUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 112540 0.66 0.836788
Target:  5'- cCUGcGGGCGCCcgccGAGcGGGGggGCgCgCCGu -3'
miRNA:   3'- -GGC-CCUGCGGu---CUU-CCCCuuUG-G-GGC- -5'
21407 5' -59.1 NC_004812.1 + 19649 0.66 0.836788
Target:  5'- gUGGGcCGCCAGGgcgAGGGGGu-CCgUGg -3'
miRNA:   3'- gGCCCuGCGGUCU---UCCCCUuuGGgGC- -5'
21407 5' -59.1 NC_004812.1 + 126797 0.66 0.836788
Target:  5'- cCCaGGGuCcCCGGAGGcGGGGcgccGACCCCc -3'
miRNA:   3'- -GG-CCCuGcGGUCUUC-CCCU----UUGGGGc -5'
21407 5' -59.1 NC_004812.1 + 61570 0.66 0.836788
Target:  5'- gCCGGGACcCCccucgcGGAuccGGcGGuGGAGCCCCa -3'
miRNA:   3'- -GGCCCUGcGG------UCU---UC-CC-CUUUGGGGc -5'
21407 5' -59.1 NC_004812.1 + 72033 0.66 0.836788
Target:  5'- gCCGGGACgGUCuGggGGGGcggggggucggGGGCgCUGg -3'
miRNA:   3'- -GGCCCUG-CGGuCuuCCCC-----------UUUGgGGC- -5'
21407 5' -59.1 NC_004812.1 + 93991 0.66 0.835995
Target:  5'- gCGGGcuauaaggcGCGCCcaggaagAGggGGGGAAACgCgGc -3'
miRNA:   3'- gGCCC---------UGCGG-------UCuuCCCCUUUGgGgC- -5'
21407 5' -59.1 NC_004812.1 + 114474 0.66 0.834403
Target:  5'- cCCGGGcguggcCGCCGGggGaaGGGcggcgggcgacggcGGACUCCGg -3'
miRNA:   3'- -GGCCCu-----GCGGUCuuC--CCC--------------UUUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 56432 0.66 0.832003
Target:  5'- uCCGGG-CGgCGGgcGGcGGGccuggcggcgcgaugAGCCCCGc -3'
miRNA:   3'- -GGCCCuGCgGUCuuCC-CCU---------------UUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.