miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21408 3' -50.3 NC_004812.1 + 97717 0.66 0.99664
Target:  5'- uUGGGUGGaug---GGGGACAGCGGc- -3'
miRNA:   3'- -ACCCGCCaagauaCCCUUGUUGUUcu -5'
21408 3' -50.3 NC_004812.1 + 37717 0.66 0.99664
Target:  5'- cGGGCgucuGGggCUGggugGGGGGCGGCGGc- -3'
miRNA:   3'- aCCCG----CCaaGAUa---CCCUUGUUGUUcu -5'
21408 3' -50.3 NC_004812.1 + 60892 0.66 0.99664
Target:  5'- -aGGCGGaagUCggcgGUGGGGcGCGGCAGGc -3'
miRNA:   3'- acCCGCCa--AGa---UACCCU-UGUUGUUCu -5'
21408 3' -50.3 NC_004812.1 + 43717 0.66 0.99664
Target:  5'- cUGGGCGGcUUC---GGGAACgAACGcgcGGAu -3'
miRNA:   3'- -ACCCGCC-AAGauaCCCUUG-UUGU---UCU- -5'
21408 3' -50.3 NC_004812.1 + 108057 0.66 0.99664
Target:  5'- cGGGCGGUgagg-GGGAagucgGCGGCGGu- -3'
miRNA:   3'- aCCCGCCAagauaCCCU-----UGUUGUUcu -5'
21408 3' -50.3 NC_004812.1 + 6816 0.66 0.99664
Target:  5'- cGGGCgucuGGggCUGggugGGGGGCGGCGGc- -3'
miRNA:   3'- aCCCG----CCaaGAUa---CCCUUGUUGUUcu -5'
21408 3' -50.3 NC_004812.1 + 39894 0.66 0.99664
Target:  5'- cGGagaGUGGggUCUAagGGGAcuggGCGACAAGAg -3'
miRNA:   3'- aCC---CGCCa-AGAUa-CCCU----UGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 37552 0.66 0.996412
Target:  5'- gGGGUGGgggagaugGGGGAgAGCGGGGu -3'
miRNA:   3'- aCCCGCCaagaua--CCCUUgUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 6651 0.66 0.996412
Target:  5'- gGGGUGGgggagaugGGGGAgAGCGGGGu -3'
miRNA:   3'- aCCCGCCaagaua--CCCUUgUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 58400 0.66 0.996108
Target:  5'- -aGGCGGccgccgccuggaggCUggGGGGGCGGCGGGAc -3'
miRNA:   3'- acCCGCCaa------------GAuaCCCUUGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 121763 0.66 0.996045
Target:  5'- cGGGCcuccGGgaggc-GGGGGCAGCGAGGg -3'
miRNA:   3'- aCCCG----CCaagauaCCCUUGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 66044 0.66 0.996045
Target:  5'- gUGGGCcgaGGUUCcc-GGGAagACGACGuAGAg -3'
miRNA:   3'- -ACCCG---CCAAGauaCCCU--UGUUGU-UCU- -5'
21408 3' -50.3 NC_004812.1 + 106715 0.66 0.996045
Target:  5'- cGGGgGGccCUcgGGGucgGCGGCGGGGc -3'
miRNA:   3'- aCCCgCCaaGAuaCCCu--UGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 40504 0.66 0.996045
Target:  5'- aGGGCGGgcgCg--GGGGAgGGgAGGGg -3'
miRNA:   3'- aCCCGCCaa-GauaCCCUUgUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 70900 0.66 0.996045
Target:  5'- gGGGCGGggaUCUcgcgcggGGGGGCGGgAGGu -3'
miRNA:   3'- aCCCGCCa--AGAua-----CCCUUGUUgUUCu -5'
21408 3' -50.3 NC_004812.1 + 152665 0.66 0.996045
Target:  5'- cGGGCcuccGGgaggc-GGGGGCAGCGAGGg -3'
miRNA:   3'- aCCCG----CCaagauaCCCUUGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 86812 0.66 0.995649
Target:  5'- aGGGCGGcggCgacgcgGUGGGAGaaagaccacacggaGGCGAGAg -3'
miRNA:   3'- aCCCGCCaa-Ga-----UACCCUUg-------------UUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 10917 0.66 0.995367
Target:  5'- gUGuGGCGGaUCg--GGGGACGAgGGGu -3'
miRNA:   3'- -AC-CCGCCaAGauaCCCUUGUUgUUCu -5'
21408 3' -50.3 NC_004812.1 + 63590 0.66 0.995367
Target:  5'- gGGGUGuGUUCcgcgUGUGGGAcauCGGCcAGAg -3'
miRNA:   3'- aCCCGC-CAAG----AUACCCUu--GUUGuUCU- -5'
21408 3' -50.3 NC_004812.1 + 130472 0.66 0.994917
Target:  5'- cGGGCGGccggCggcggcgaggcgGGGGGCGACGGGu -3'
miRNA:   3'- aCCCGCCaa--Gaua---------CCCUUGUUGUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.