miRNA display CGI


Results 1 - 20 of 491 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21409 3' -53.8 NC_004812.1 + 47774 0.65 0.973569
Target:  5'- uCCCGuCUCGCgGCCcgagugaccGGAGGGCGugcgucgccccucCGGUCa -3'
miRNA:   3'- -GGGC-GAGCGgCGG---------CUUUUUGU-------------GUCAG- -5'
21409 3' -53.8 NC_004812.1 + 125336 0.65 0.973569
Target:  5'- gCCGCgggaugCGCCggcggcgGCCGAGAGugAgGGUg -3'
miRNA:   3'- gGGCGa-----GCGG-------CGGCUUUUugUgUCAg -5'
21409 3' -53.8 NC_004812.1 + 156237 0.65 0.973569
Target:  5'- gCCGCgggaugCGCCggcggcgGCCGAGAGugAgGGUg -3'
miRNA:   3'- gGGCGa-----GCGG-------CGGCUUUUugUgUCAg -5'
21409 3' -53.8 NC_004812.1 + 131757 0.66 0.972199
Target:  5'- cCCCGCagccgCGCCGCCcgc-GGCGCgugccgcgauccgggGGUCg -3'
miRNA:   3'- -GGGCGa----GCGGCGGcuuuUUGUG---------------UCAG- -5'
21409 3' -53.8 NC_004812.1 + 112327 0.66 0.971067
Target:  5'- gCgGCUgGCCGCgGAG----GCGGUCg -3'
miRNA:   3'- gGgCGAgCGGCGgCUUuuugUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 128473 0.66 0.971067
Target:  5'- cCCUGCgCGCCcagcGCCGAGAcgucgggcgGGC-CGGUCc -3'
miRNA:   3'- -GGGCGaGCGG----CGGCUUU---------UUGuGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 111363 0.66 0.971067
Target:  5'- cCCCaGCUCGUCGCCc---AGCugAGg- -3'
miRNA:   3'- -GGG-CGAGCGGCGGcuuuUUGugUCag -5'
21409 3' -53.8 NC_004812.1 + 94471 0.66 0.971067
Target:  5'- gCCGCccgCGCCGCCGAuccGGCcucCGGg- -3'
miRNA:   3'- gGGCGa--GCGGCGGCUuu-UUGu--GUCag -5'
21409 3' -53.8 NC_004812.1 + 31732 0.66 0.971067
Target:  5'- --aGCUCG--GCCGAGAGGCGCGGg- -3'
miRNA:   3'- gggCGAGCggCGGCUUUUUGUGUCag -5'
21409 3' -53.8 NC_004812.1 + 126555 0.66 0.971067
Target:  5'- gCCGC-CGUCGCCGAGGcgUGCcccugcGUCg -3'
miRNA:   3'- gGGCGaGCGGCGGCUUUuuGUGu-----CAG- -5'
21409 3' -53.8 NC_004812.1 + 84310 0.66 0.971067
Target:  5'- aCCUcggGCcgCGUCGCCGggGAGCGCc--- -3'
miRNA:   3'- -GGG---CGa-GCGGCGGCuuUUUGUGucag -5'
21409 3' -53.8 NC_004812.1 + 138166 0.66 0.971067
Target:  5'- cCCCGCcgCGCCaCCGG---ACGCGGcCc -3'
miRNA:   3'- -GGGCGa-GCGGcGGCUuuuUGUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 76404 0.66 0.971067
Target:  5'- aCCaGUUCGCCcCCGAccuugaacccgGAGGgGCGGUCu -3'
miRNA:   3'- gGG-CGAGCGGcGGCU-----------UUUUgUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 144459 0.66 0.971067
Target:  5'- cCCCGaCggcgCGCCGCCcc--AGCGCGGg- -3'
miRNA:   3'- -GGGC-Ga---GCGGCGGcuuuUUGUGUCag -5'
21409 3' -53.8 NC_004812.1 + 54108 0.66 0.971067
Target:  5'- gUCCGaCUCGUCGUCGu----CGCGGUg -3'
miRNA:   3'- -GGGC-GAGCGGCGGCuuuuuGUGUCAg -5'
21409 3' -53.8 NC_004812.1 + 130836 0.66 0.971067
Target:  5'- gUCCGCcggggCGCCGCcCGggGucggcgggGGCGCGG-Cg -3'
miRNA:   3'- -GGGCGa----GCGGCG-GCuuU--------UUGUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 5328 0.66 0.971067
Target:  5'- gUCCGCcggggCGCCGCcCGggGucggcgggGGCGCGG-Cg -3'
miRNA:   3'- -GGGCGa----GCGGCG-GCuuU--------UUGUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 43843 0.66 0.971067
Target:  5'- gCgGCUCGCggCGCCGAcguccGGGCGCGG-Cg -3'
miRNA:   3'- gGgCGAGCG--GCGGCUu----UUUGUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 98701 0.66 0.970779
Target:  5'- aCCGC-CG-CGCCGggGGcggcggcGCGgGGUCg -3'
miRNA:   3'- gGGCGaGCgGCGGCuuUU-------UGUgUCAG- -5'
21409 3' -53.8 NC_004812.1 + 6243 0.66 0.970488
Target:  5'- cCCCGCg-GCCGUCucgcgccCGCGGUCg -3'
miRNA:   3'- -GGGCGagCGGCGGcuuuuu-GUGUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.