miRNA display CGI


Results 1 - 20 of 600 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21410 5' -62 NC_004812.1 + 122815 0.65 0.666913
Target:  5'- gCUGUgggCGGCGcaGCGGgcgaugucgucggcCGCCGAGC-CCGu -3'
miRNA:   3'- -GACGa--GCCGU--UGCC--------------GCGGCUCGcGGU- -5'
21410 5' -62 NC_004812.1 + 114971 0.66 0.660032
Target:  5'- -gGCgacgUCGGCcuCGGCGCUGA-CGUCAg -3'
miRNA:   3'- gaCG----AGCCGuuGCCGCGGCUcGCGGU- -5'
21410 5' -62 NC_004812.1 + 34688 0.66 0.660032
Target:  5'- gCUGCgaggCGuGCGugagccaGGCGaCGAGCGCCu -3'
miRNA:   3'- -GACGa---GC-CGUug-----CCGCgGCUCGCGGu -5'
21410 5' -62 NC_004812.1 + 14268 0.66 0.660032
Target:  5'- --cCUCGGCGaccgcacgGCGGuCGCCGAaucaguagggcGCGCCc -3'
miRNA:   3'- gacGAGCCGU--------UGCC-GCGGCU-----------CGCGGu -5'
21410 5' -62 NC_004812.1 + 76307 0.66 0.660032
Target:  5'- -aGCgCGGC-GCGGuCGCCGucCGCCu -3'
miRNA:   3'- gaCGaGCCGuUGCC-GCGGCucGCGGu -5'
21410 5' -62 NC_004812.1 + 147235 0.66 0.660032
Target:  5'- -aGCgCGGCcacgaaguucAUGGcCGCCGuGCGCCAc -3'
miRNA:   3'- gaCGaGCCGu---------UGCC-GCGGCuCGCGGU- -5'
21410 5' -62 NC_004812.1 + 142468 0.66 0.660032
Target:  5'- -gGCUgGGCGAgGGCGCCcuGAcGCGgCu -3'
miRNA:   3'- gaCGAgCCGUUgCCGCGG--CU-CGCgGu -5'
21410 5' -62 NC_004812.1 + 101168 0.66 0.660032
Target:  5'- gCUGCggaaGGCGGCGGCcUCGGGUccggucugcgggGCCAg -3'
miRNA:   3'- -GACGag--CCGUUGCCGcGGCUCG------------CGGU- -5'
21410 5' -62 NC_004812.1 + 152847 0.66 0.660032
Target:  5'- -aGcCUCGuCGcCGGCGCCGccGCGCCGc -3'
miRNA:   3'- gaC-GAGCcGUuGCCGCGGCu-CGCGGU- -5'
21410 5' -62 NC_004812.1 + 64012 0.66 0.660032
Target:  5'- -aGCauuUCGGuCAGCucGGgGCCccgGAGCGCCAg -3'
miRNA:   3'- gaCG---AGCC-GUUG--CCgCGG---CUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 15326 0.66 0.660032
Target:  5'- uCUGCUC--CAGCGGCGCCaGGUggGCCc -3'
miRNA:   3'- -GACGAGccGUUGCCGCGGcUCG--CGGu -5'
21410 5' -62 NC_004812.1 + 95680 0.66 0.660032
Target:  5'- gCUGUaCGGCAGCcGCGUggucauUGGGUGCCGc -3'
miRNA:   3'- -GACGaGCCGUUGcCGCG------GCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 106022 0.66 0.660032
Target:  5'- gUGCcCGGCGAuccCGGCcuGCCGccGGCGCUc -3'
miRNA:   3'- gACGaGCCGUU---GCCG--CGGC--UCGCGGu -5'
21410 5' -62 NC_004812.1 + 117177 0.66 0.660032
Target:  5'- cCUGCUgacCGGCGA-GGCGCuCGAcgggacccGCGUCGg -3'
miRNA:   3'- -GACGA---GCCGUUgCCGCG-GCU--------CGCGGU- -5'
21410 5' -62 NC_004812.1 + 8247 0.66 0.660032
Target:  5'- -gGC-CGGggguccgccccCGGgGGCGCCGGGgGCCGg -3'
miRNA:   3'- gaCGaGCC-----------GUUgCCGCGGCUCgCGGU- -5'
21410 5' -62 NC_004812.1 + 51593 0.66 0.660032
Target:  5'- -gGUcagUCGGCAccGCGGgGCgCGAgggGCGCCGc -3'
miRNA:   3'- gaCG---AGCCGU--UGCCgCG-GCU---CGCGGU- -5'
21410 5' -62 NC_004812.1 + 97376 0.66 0.660032
Target:  5'- -aGCUCgccgcggucgcgGGCGugGGCGCgcgggccuCGGGCGCg- -3'
miRNA:   3'- gaCGAG------------CCGUugCCGCG--------GCUCGCGgu -5'
21410 5' -62 NC_004812.1 + 39148 0.66 0.660032
Target:  5'- -gGC-CGGggguccgccccCGGgGGCGCCGGGgGCCGg -3'
miRNA:   3'- gaCGaGCC-----------GUUgCCGCGGCUCgCGGU- -5'
21410 5' -62 NC_004812.1 + 27339 0.66 0.660032
Target:  5'- -aGcCUCGuCGcCGGCGCCGccGCGCCGc -3'
miRNA:   3'- gaC-GAGCcGUuGCCGCGGCu-CGCGGU- -5'
21410 5' -62 NC_004812.1 + 89111 0.66 0.660032
Target:  5'- -gGCgcgCGaGaCGACGGCcCgCGGGCGCCAg -3'
miRNA:   3'- gaCGa--GC-C-GUUGCCGcG-GCUCGCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.