miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21412 3' -53 NC_004812.1 + 120816 0.66 0.984044
Target:  5'- gGCCCCgaGacgcacUUCACGcagUACCUCAUCu -3'
miRNA:   3'- -CGGGGgaCaaa---GAGUGC---AUGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 9518 0.66 0.984044
Target:  5'- cGCCaCCUGUUUCgCGCGUucggcugcggagGCCcCGCUu -3'
miRNA:   3'- -CGGgGGACAAAGaGUGCA------------UGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 54153 0.66 0.984044
Target:  5'- gGCUCCCggcggCgggaCACGUACCgCGCCc -3'
miRNA:   3'- -CGGGGGacaaaGa---GUGCAUGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 51002 0.66 0.98329
Target:  5'- aGUCCCCUGgaagcgcagaUCGCcgcgcuggucgGUGCCaUCGCCg -3'
miRNA:   3'- -CGGGGGACaaag------AGUG-----------CAUGG-AGUGG- -5'
21412 3' -53 NC_004812.1 + 50373 0.66 0.982706
Target:  5'- cGCCCCCgacgccgggggCGCGUGCaC-CACCg -3'
miRNA:   3'- -CGGGGGacaaaga----GUGCAUG-GaGUGG- -5'
21412 3' -53 NC_004812.1 + 58624 0.66 0.982108
Target:  5'- aGCCCCC-GUgcCUCcCG-GCC-CACCg -3'
miRNA:   3'- -CGGGGGaCAaaGAGuGCaUGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 23193 0.66 0.982108
Target:  5'- uGCaCUUCgcGUgUCUgACGUACUUCGCCg -3'
miRNA:   3'- -CG-GGGGa-CAaAGAgUGCAUGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 7739 0.66 0.982108
Target:  5'- cGCgCCCgucGUccUCUCGCGaACCcCACCc -3'
miRNA:   3'- -CGgGGGa--CAa-AGAGUGCaUGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 133247 0.66 0.982108
Target:  5'- cGCgCCCgucGUccUCUCGCGaACCcCACCc -3'
miRNA:   3'- -CGgGGGa--CAa-AGAGUGCaUGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 119375 0.66 0.981905
Target:  5'- cGCCCCCUGcugccccucCUgcccggggcccccCGCGUGCCcgggggCGCCg -3'
miRNA:   3'- -CGGGGGACaaa------GA-------------GUGCAUGGa-----GUGG- -5'
21412 3' -53 NC_004812.1 + 150276 0.66 0.981905
Target:  5'- cGCCCCCUGcugccccucCUgcccggggcccccCGCGUGCCcgggggCGCCg -3'
miRNA:   3'- -CGGGGGACaaa------GA-------------GUGCAUGGa-----GUGG- -5'
21412 3' -53 NC_004812.1 + 50043 0.66 0.9817
Target:  5'- gGCCCCCUGgcgauuaACGUggACCaccgCGCCc -3'
miRNA:   3'- -CGGGGGACaaagag-UGCA--UGGa---GUGG- -5'
21412 3' -53 NC_004812.1 + 51838 0.66 0.980864
Target:  5'- gGCCCCCUGgacccCcCGCGUcGCCggguucaacaagcgCACCu -3'
miRNA:   3'- -CGGGGGACaaa--GaGUGCA-UGGa-------------GUGG- -5'
21412 3' -53 NC_004812.1 + 81687 0.66 0.98
Target:  5'- uCCCCCgacccgCUCGCGcGCCUgCACg -3'
miRNA:   3'- cGGGGGacaaa-GAGUGCaUGGA-GUGg -5'
21412 3' -53 NC_004812.1 + 19121 0.66 0.98
Target:  5'- gGCCCCCgccagCUCGgCGUgggcgGCCagCGCCg -3'
miRNA:   3'- -CGGGGGacaaaGAGU-GCA-----UGGa-GUGG- -5'
21412 3' -53 NC_004812.1 + 20547 0.66 0.98
Target:  5'- cCCCCCacagGaUUCUgaagagcaucagCGCGUgguccGCCUCGCCg -3'
miRNA:   3'- cGGGGGa---CaAAGA------------GUGCA-----UGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 85759 0.66 0.979779
Target:  5'- cGCCCCCcGcgUCUCcucguggGCGUcgucCCUCGCg -3'
miRNA:   3'- -CGGGGGaCaaAGAG-------UGCAu---GGAGUGg -5'
21412 3' -53 NC_004812.1 + 64850 0.66 0.977713
Target:  5'- gGCCgCCCaca-UCUCGCGgGCCUCuuCCu -3'
miRNA:   3'- -CGG-GGGacaaAGAGUGCaUGGAGu-GG- -5'
21412 3' -53 NC_004812.1 + 12555 0.66 0.977713
Target:  5'- gGCCCCCgg---Cg-GCGUGCCgcCGCCg -3'
miRNA:   3'- -CGGGGGacaaaGagUGCAUGGa-GUGG- -5'
21412 3' -53 NC_004812.1 + 101975 0.66 0.977713
Target:  5'- aCCCCCgugGUgagCcCGCGgGCCUCuCCg -3'
miRNA:   3'- cGGGGGa--CAaa-GaGUGCaUGGAGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.