miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21420 5' -55 NC_004812.1 + 91491 0.65 0.935732
Target:  5'- cAGACcgaCCGGcAGGgGCCGCGCCaGCc -3'
miRNA:   3'- -UUUGag-GGCCaUCUgUGGCGUGGaUG- -5'
21420 5' -55 NC_004812.1 + 80879 0.65 0.935732
Target:  5'- --gUUCCgGGUGGACACggagccgcuggCGCGgCUGCu -3'
miRNA:   3'- uuuGAGGgCCAUCUGUG-----------GCGUgGAUG- -5'
21420 5' -55 NC_004812.1 + 96946 0.65 0.935732
Target:  5'- ----aCCUGG-AGACGCgGCacGCCUGCg -3'
miRNA:   3'- uuugaGGGCCaUCUGUGgCG--UGGAUG- -5'
21420 5' -55 NC_004812.1 + 22927 0.65 0.935732
Target:  5'- -cGCcCCCGcGccUGGACGCCcagagucuguggGCACCUACg -3'
miRNA:   3'- uuUGaGGGC-C--AUCUGUGG------------CGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 91772 0.65 0.935732
Target:  5'- cGAACaCCCGGaGGAgGCUGCACagGCa -3'
miRNA:   3'- -UUUGaGGGCCaUCUgUGGCGUGgaUG- -5'
21420 5' -55 NC_004812.1 + 111176 0.66 0.930622
Target:  5'- gGAGCUgaaCCugaCGGUGGcCACCGCGCCc-- -3'
miRNA:   3'- -UUUGA---GG---GCCAUCuGUGGCGUGGaug -5'
21420 5' -55 NC_004812.1 + 14340 0.66 0.930622
Target:  5'- gGAGCUCCgGGa----GCCGCACgUGCu -3'
miRNA:   3'- -UUUGAGGgCCaucugUGGCGUGgAUG- -5'
21420 5' -55 NC_004812.1 + 58928 0.66 0.930622
Target:  5'- gAAGCcggUCUCGGcGGGgGCCGCcugGCCUGCc -3'
miRNA:   3'- -UUUG---AGGGCCaUCUgUGGCG---UGGAUG- -5'
21420 5' -55 NC_004812.1 + 20673 0.66 0.930622
Target:  5'- aGAGCgaggaGGUggcGGACGCCGCcGCCUGCu -3'
miRNA:   3'- -UUUGaggg-CCA---UCUGUGGCG-UGGAUG- -5'
21420 5' -55 NC_004812.1 + 51084 0.66 0.925265
Target:  5'- aAGACgCCCGGUGauGACGgCCGCACa--- -3'
miRNA:   3'- -UUUGaGGGCCAU--CUGU-GGCGUGgaug -5'
21420 5' -55 NC_004812.1 + 20043 0.66 0.925265
Target:  5'- cGAGCgUCCCGGUAGGCcaucagGCCccgcgucgcgcGCGCCaGCc -3'
miRNA:   3'- -UUUG-AGGGCCAUCUG------UGG-----------CGUGGaUG- -5'
21420 5' -55 NC_004812.1 + 83 0.66 0.925265
Target:  5'- cGGGCUCCCGGgcGGgcucccggcccCGCgCGCGCCccgGCc -3'
miRNA:   3'- -UUUGAGGGCCauCU-----------GUG-GCGUGGa--UG- -5'
21420 5' -55 NC_004812.1 + 138264 0.66 0.925265
Target:  5'- cGGCggCCgCGGUcGcGCGCCGCGcCCUGCg -3'
miRNA:   3'- uUUGa-GG-GCCAuC-UGUGGCGU-GGAUG- -5'
21420 5' -55 NC_004812.1 + 121895 0.66 0.925265
Target:  5'- cGGCUgCCGGUguacgAGGCGCuCGuCGCCUGg -3'
miRNA:   3'- uUUGAgGGCCA-----UCUGUG-GC-GUGGAUg -5'
21420 5' -55 NC_004812.1 + 20589 0.66 0.925265
Target:  5'- cGGACcggCCGGUggcgaGGACG-CGCGCCUGCg -3'
miRNA:   3'- -UUUGag-GGCCA-----UCUGUgGCGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 156493 0.66 0.925265
Target:  5'- cGGGCUCCCGGgcGGgcucccggcccCGCgCGCGCCccgGCc -3'
miRNA:   3'- -UUUGAGGGCCauCU-----------GUG-GCGUGGa--UG- -5'
21420 5' -55 NC_004812.1 + 40442 0.66 0.925265
Target:  5'- cGGC-CCCGGcauaccGAUGCCGCGCCgcgGCc -3'
miRNA:   3'- uUUGaGGGCCau----CUGUGGCGUGGa--UG- -5'
21420 5' -55 NC_004812.1 + 137493 0.66 0.925265
Target:  5'- gGGGCUCCUGGUcaACcCCGgCGCaCUACg -3'
miRNA:   3'- -UUUGAGGGCCAucUGuGGC-GUG-GAUG- -5'
21420 5' -55 NC_004812.1 + 142238 0.66 0.925265
Target:  5'- ----aCCUGGUGcGcCGCCGCGCCcGCg -3'
miRNA:   3'- uuugaGGGCCAU-CuGUGGCGUGGaUG- -5'
21420 5' -55 NC_004812.1 + 125592 0.66 0.925265
Target:  5'- cGGGCUCCCGGgcGGgcucccggcccCGCgCGCGCCccgGCc -3'
miRNA:   3'- -UUUGAGGGCCauCU-----------GUG-GCGUGGa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.