miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21427 5' -60 NC_004812.1 + 94295 0.66 0.796687
Target:  5'- -gCGUgcgccUGGGUGCGcuuggucGCCGGcugcGCGGCGGu -3'
miRNA:   3'- uaGCA-----GCUCACGCu------CGGCC----UGCCGCC- -5'
21427 5' -60 NC_004812.1 + 113064 0.66 0.796687
Target:  5'- cGUCGgccgCGGcGgcaGCGAGCCGcGacaccgccGCGGCGGa -3'
miRNA:   3'- -UAGCa---GCU-Ca--CGCUCGGC-C--------UGCCGCC- -5'
21427 5' -60 NC_004812.1 + 44042 0.66 0.796687
Target:  5'- -gCGUCaccUGCGcGUCGGACGGCGc -3'
miRNA:   3'- uaGCAGcucACGCuCGGCCUGCCGCc -5'
21427 5' -60 NC_004812.1 + 16835 0.66 0.796687
Target:  5'- gGUCGggggguagGGGUGgGAGuCCGGGCGGgcccCGGg -3'
miRNA:   3'- -UAGCag------CUCACgCUC-GGCCUGCC----GCC- -5'
21427 5' -60 NC_004812.1 + 100131 0.66 0.796687
Target:  5'- --aGggGAGgcgugGCG-GCgCGGGCGGCGGg -3'
miRNA:   3'- uagCagCUCa----CGCuCG-GCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 39541 0.66 0.796687
Target:  5'- cUCGaCgGGGUGCGGGCCGucgcgggcGAUGaGCGGc -3'
miRNA:   3'- uAGCaG-CUCACGCUCGGC--------CUGC-CGCC- -5'
21427 5' -60 NC_004812.1 + 123686 0.66 0.796687
Target:  5'- -aCGUCcGGcGCGAGcCCGGACGccCGGg -3'
miRNA:   3'- uaGCAGcUCaCGCUC-GGCCUGCc-GCC- -5'
21427 5' -60 NC_004812.1 + 152200 0.66 0.796687
Target:  5'- cUCGggcaggCGAGUGCG-GCgGGACcacccgGGCGa -3'
miRNA:   3'- uAGCa-----GCUCACGCuCGgCCUG------CCGCc -5'
21427 5' -60 NC_004812.1 + 121299 0.66 0.796687
Target:  5'- cUCGggcaggCGAGUGCG-GCgGGACcacccgGGCGa -3'
miRNA:   3'- uAGCa-----GCUCACGCuCGgCCUG------CCGCc -5'
21427 5' -60 NC_004812.1 + 128494 0.66 0.79408
Target:  5'- -aCGUCG-G-GCGGGCCGGuCcaguugccggcccaGGCGGc -3'
miRNA:   3'- uaGCAGCuCaCGCUCGGCCuG--------------CCGCC- -5'
21427 5' -60 NC_004812.1 + 33971 0.66 0.791461
Target:  5'- gGUCccCGAGcuccucuucuaccacUGCGAGCCGccCGGCGGc -3'
miRNA:   3'- -UAGcaGCUC---------------ACGCUCGGCcuGCCGCC- -5'
21427 5' -60 NC_004812.1 + 99414 0.66 0.791461
Target:  5'- gGUCGUCGGG-GCGcAugaagaacauguacuGCUGGA-GGCGGu -3'
miRNA:   3'- -UAGCAGCUCaCGC-U---------------CGGCCUgCCGCC- -5'
21427 5' -60 NC_004812.1 + 102872 0.66 0.788831
Target:  5'- cUCGUCGcccaggcucacguccGUGC--GCgGGGCGGCGGa -3'
miRNA:   3'- uAGCAGCu--------------CACGcuCGgCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 12565 0.66 0.787951
Target:  5'- -aCGUCGAuaGCGAGCguggCGGGaaacgagcgaucCGGCGGg -3'
miRNA:   3'- uaGCAGCUcaCGCUCG----GCCU------------GCCGCC- -5'
21427 5' -60 NC_004812.1 + 61369 0.66 0.787951
Target:  5'- -gCGUauaucCGAGa--GGGCgGGGCGGCGGg -3'
miRNA:   3'- uaGCA-----GCUCacgCUCGgCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 29347 0.66 0.787951
Target:  5'- -gCGgcugCGAGggggcGCGGGCuCGGGCcGCGGa -3'
miRNA:   3'- uaGCa---GCUCa----CGCUCG-GCCUGcCGCC- -5'
21427 5' -60 NC_004812.1 + 154855 0.66 0.787951
Target:  5'- -gCGgcugCGAGggggcGCGGGCuCGGGCcGCGGa -3'
miRNA:   3'- uaGCa---GCUCa----CGCUCG-GCCUGcCGCC- -5'
21427 5' -60 NC_004812.1 + 148858 0.66 0.782646
Target:  5'- cUCGUCGGGgugggGUucgcgagaggacgacGGGCgCGGAuccCGGCGGg -3'
miRNA:   3'- uAGCAGCUCa----CG---------------CUCG-GCCU---GCCGCC- -5'
21427 5' -60 NC_004812.1 + 23350 0.66 0.782646
Target:  5'- cUCGUCGGGgugggGUucgcgagaggacgacGGGCgCGGAuccCGGCGGg -3'
miRNA:   3'- uAGCAGCUCa----CG---------------CUCG-GCCU---GCCGCC- -5'
21427 5' -60 NC_004812.1 + 106704 0.66 0.779085
Target:  5'- -gCGUCGGGccccgGgGGGCCcucggggucGGCGGCGGg -3'
miRNA:   3'- uaGCAGCUCa----CgCUCGGc--------CUGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.