miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21431 5' -56.6 NC_004812.1 + 25055 0.66 0.91674
Target:  5'- cCAgCUCGCCcgagucccacgcgaGcGGGGAgauggugcgucgcuCCAGAUCGGGGu -3'
miRNA:   3'- -GUgGAGCGG--------------U-CUCCU--------------GGUCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 130165 0.66 0.914452
Target:  5'- -cCCUCGUCcucggggacGAGGACgAGAaCGGGGa -3'
miRNA:   3'- guGGAGCGGu--------CUCCUGgUCUaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 101005 0.66 0.914452
Target:  5'- cCGCCUCGCgCGgcgcGAGGcAgCGGAUCGccucGGGg -3'
miRNA:   3'- -GUGGAGCG-GU----CUCC-UgGUCUAGC----UCC- -5'
21431 5' -56.6 NC_004812.1 + 75021 0.66 0.914452
Target:  5'- gACCUCGUCGcccGAGccGACCcccucgucaagcAGAUUGAGGa -3'
miRNA:   3'- gUGGAGCGGU---CUC--CUGG------------UCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 13116 0.66 0.914452
Target:  5'- cCGCCUCGCCGc--GuCCAGGcCGGGGc -3'
miRNA:   3'- -GUGGAGCGGUcucCuGGUCUaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 109509 0.66 0.914452
Target:  5'- -gUCUCGCCGcGAcGGAgCCGGGggcCGAGGc -3'
miRNA:   3'- guGGAGCGGU-CU-CCU-GGUCUa--GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 116120 0.66 0.914452
Target:  5'- gCGCC-CGCCcucGGGGcCCGGGcccCGAGGg -3'
miRNA:   3'- -GUGGaGCGGu--CUCCuGGUCUa--GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 97948 0.66 0.914452
Target:  5'- uCGCCUgGCCGGuGGGGuCCAGggCGccgguccuGGGg -3'
miRNA:   3'- -GUGGAgCGGUC-UCCU-GGUCuaGC--------UCC- -5'
21431 5' -56.6 NC_004812.1 + 155677 0.66 0.914452
Target:  5'- aGCCgggagCGCCGGcGGGCuCGGcgcgcgCGAGGg -3'
miRNA:   3'- gUGGa----GCGGUCuCCUG-GUCua----GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 73166 0.66 0.914452
Target:  5'- aCGCgCUgGCCcGAGGGCCGGuacagggCGuGGg -3'
miRNA:   3'- -GUG-GAgCGGuCUCCUGGUCua-----GCuCC- -5'
21431 5' -56.6 NC_004812.1 + 92784 0.66 0.914452
Target:  5'- uCAUgUCGCUGGuGGACCAGAagCGGu- -3'
miRNA:   3'- -GUGgAGCGGUCuCCUGGUCUa-GCUcc -5'
21431 5' -56.6 NC_004812.1 + 66762 0.66 0.914452
Target:  5'- gGCCUCGCgCAcgaauguggcGAGcGCCguGGGUCGGGGc -3'
miRNA:   3'- gUGGAGCG-GU----------CUCcUGG--UCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 65715 0.66 0.908569
Target:  5'- uCACCcCGCCGGAGcucguGACCgucccGGAggcgcagcucgUCGAGGa -3'
miRNA:   3'- -GUGGaGCGGUCUC-----CUGG-----UCU-----------AGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 30785 0.66 0.908569
Target:  5'- gGCCcCGCCuGcGGGGCCgcGGGcCGAGGg -3'
miRNA:   3'- gUGGaGCGGuC-UCCUGG--UCUaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 29873 0.66 0.908569
Target:  5'- aGCCgucCGCCAGgaaccccgGGGGCCGGGcCGGGc -3'
miRNA:   3'- gUGGa--GCGGUC--------UCCUGGUCUaGCUCc -5'
21431 5' -56.6 NC_004812.1 + 155381 0.66 0.908569
Target:  5'- aGCCgucCGCCAGgaaccccgGGGGCCGGGcCGGGc -3'
miRNA:   3'- gUGGa--GCGGUC--------UCCUGGUCUaGCUCc -5'
21431 5' -56.6 NC_004812.1 + 34531 0.66 0.907968
Target:  5'- uUACCUgCGCCgcGGAGGcagcuuuauuaACCgcugagcGGGUCGGGGg -3'
miRNA:   3'- -GUGGA-GCGG--UCUCC-----------UGG-------UCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 22317 0.66 0.902457
Target:  5'- gGCCUcggCGCCGGGgcuGGACCugguuccccuAGAcUCGGGGa -3'
miRNA:   3'- gUGGA---GCGGUCU---CCUGG----------UCU-AGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 49138 0.66 0.902457
Target:  5'- gGCCaUCGCCgAGcGGGCCcuggGGAUCGGcGGc -3'
miRNA:   3'- gUGG-AGCGG-UCuCCUGG----UCUAGCU-CC- -5'
21431 5' -56.6 NC_004812.1 + 42220 0.66 0.902457
Target:  5'- cUACCUgaCGCCcgaGGAGGACCGcgcgcgucgcguGuUCGGGGa -3'
miRNA:   3'- -GUGGA--GCGG---UCUCCUGGU------------CuAGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.