miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21434 3' -57.4 NC_004812.1 + 106773 0.66 0.84575
Target:  5'- aGGGGCGgcgucgggCGGGGCGCgcgggaggGGGCcUCGc -3'
miRNA:   3'- cUCCUGUa-------GCUCCGCGa-------CCCGaAGUa -5'
21434 3' -57.4 NC_004812.1 + 36785 0.66 0.84575
Target:  5'- gGGGGGCG-CG-GGCGC-GGGCU-CAg -3'
miRNA:   3'- -CUCCUGUaGCuCCGCGaCCCGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 29288 0.66 0.84575
Target:  5'- gGAGGAgAggCGAGGCGCgcagccgGGGCc---- -3'
miRNA:   3'- -CUCCUgUa-GCUCCGCGa------CCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 5884 0.66 0.84575
Target:  5'- gGGGGGCG-CG-GGCGC-GGGCU-CAg -3'
miRNA:   3'- -CUCCUGUaGCuCCGCGaCCCGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 154796 0.66 0.84575
Target:  5'- gGAGGAgAggCGAGGCGCgcagccgGGGCc---- -3'
miRNA:   3'- -CUCCUgUa-GCUCCGCGa------CCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 121778 0.66 0.84575
Target:  5'- cGGGGGCAgCGAGGgcCGCUuGGGCccUCGc -3'
miRNA:   3'- -CUCCUGUaGCUCC--GCGA-CCCGa-AGUa -5'
21434 3' -57.4 NC_004812.1 + 155285 0.66 0.837583
Target:  5'- cGGGGAgGggCGGGGCGCggcgGGGCccgggggUCGg -3'
miRNA:   3'- -CUCCUgUa-GCUCCGCGa---CCCGa------AGUa -5'
21434 3' -57.4 NC_004812.1 + 44324 0.66 0.837583
Target:  5'- gGAGGGCA-CGGGGCGguggUGGGCg---- -3'
miRNA:   3'- -CUCCUGUaGCUCCGCg---ACCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 29777 0.66 0.837583
Target:  5'- cGGGGAgGggCGGGGCGCggcgGGGCccgggggUCGg -3'
miRNA:   3'- -CUCCUgUa-GCUCCGCGa---CCCGa------AGUa -5'
21434 3' -57.4 NC_004812.1 + 105859 0.66 0.837583
Target:  5'- cGGGGACGUCGGacGGCGggucgUGGGCgcgCGg -3'
miRNA:   3'- -CUCCUGUAGCU--CCGCg----ACCCGaa-GUa -5'
21434 3' -57.4 NC_004812.1 + 44407 0.66 0.837583
Target:  5'- aGGGGCGUggauagccCGGGGCGCcGGGCg---- -3'
miRNA:   3'- cUCCUGUA--------GCUCCGCGaCCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 147706 0.66 0.829227
Target:  5'- -cGGGgGUCGuguGGCGCgggGGGCUguaCGUg -3'
miRNA:   3'- cuCCUgUAGCu--CCGCGa--CCCGAa--GUA- -5'
21434 3' -57.4 NC_004812.1 + 151941 0.66 0.829227
Target:  5'- gGAGGugGaCGAGGCGCgccGGcGCUaCGa -3'
miRNA:   3'- -CUCCugUaGCUCCGCGa--CC-CGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 26433 0.66 0.829227
Target:  5'- gGAGGugGaCGAGGCGCgccGGcGCUaCGa -3'
miRNA:   3'- -CUCCugUaGCUCCGCGa--CC-CGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 98498 0.66 0.820689
Target:  5'- uGGGGCGgcgCGGGGCGCcGGGUccCGg -3'
miRNA:   3'- cUCCUGUa--GCUCCGCGaCCCGaaGUa -5'
21434 3' -57.4 NC_004812.1 + 115213 0.66 0.820689
Target:  5'- cGAGGGCGaggggcguUCGuGGCGUUGGGggUgGUg -3'
miRNA:   3'- -CUCCUGU--------AGCuCCGCGACCCgaAgUA- -5'
21434 3' -57.4 NC_004812.1 + 97067 0.66 0.820689
Target:  5'- cAGcGACugCGAGGUGCUGGGCa---- -3'
miRNA:   3'- cUC-CUGuaGCUCCGCGACCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 125713 0.66 0.811978
Target:  5'- gGAGGugcCcgCGGGGCGCgGGGCcgCGc -3'
miRNA:   3'- -CUCCu--GuaGCUCCGCGaCCCGaaGUa -5'
21434 3' -57.4 NC_004812.1 + 87934 0.66 0.811978
Target:  5'- aGGGACG-CcAGGCGCUGGGUg---- -3'
miRNA:   3'- cUCCUGUaGcUCCGCGACCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 83204 0.66 0.811978
Target:  5'- -cGGGCGUCGugaggccGGCGCcGGGCUg--- -3'
miRNA:   3'- cuCCUGUAGCu------CCGCGaCCCGAagua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.