miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21434 5' -51.9 NC_004812.1 + 128233 0.66 0.992295
Target:  5'- --cUGCGGCUgcaccgggagggcgUCGGaacccaggacccccGCUUCGUCAGCg -3'
miRNA:   3'- cauGCGCCGG--------------AGCU--------------UGAAGCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 101177 0.66 0.991862
Target:  5'- -gGCgGCGGCCUCGggUccgGUCugcggGGCCa -3'
miRNA:   3'- caUG-CGCCGGAGCuuGaagCAG-----UUGG- -5'
21434 5' -51.9 NC_004812.1 + 46431 0.66 0.991862
Target:  5'- gGUACGCcGCCUCc----UCGUCGACa -3'
miRNA:   3'- -CAUGCGcCGGAGcuugaAGCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 119954 0.66 0.991862
Target:  5'- -aGCG-GGCCUCGGaggccuACUUCcUgGGCCa -3'
miRNA:   3'- caUGCgCCGGAGCU------UGAAGcAgUUGG- -5'
21434 5' -51.9 NC_004812.1 + 87468 0.66 0.991862
Target:  5'- -gGCGUGccaCUCGGACcUCGcCGGCCg -3'
miRNA:   3'- caUGCGCcg-GAGCUUGaAGCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 134258 0.66 0.991862
Target:  5'- -cGCGUcaGGCCUggaGGAgUUCGUC-ACCu -3'
miRNA:   3'- caUGCG--CCGGAg--CUUgAAGCAGuUGG- -5'
21434 5' -51.9 NC_004812.1 + 78053 0.66 0.991862
Target:  5'- -cAgGCGGCgCUCGAGCUcCG-CGAgCu -3'
miRNA:   3'- caUgCGCCG-GAGCUUGAaGCaGUUgG- -5'
21434 5' -51.9 NC_004812.1 + 79552 0.66 0.991862
Target:  5'- -gACGCGGCgCUCGAcgaACggcUCGUCc--- -3'
miRNA:   3'- caUGCGCCG-GAGCU---UGa--AGCAGuugg -5'
21434 5' -51.9 NC_004812.1 + 141760 0.66 0.991862
Target:  5'- -cGgGCGGCCgcgGGGCggCGUCGaacgGCCg -3'
miRNA:   3'- caUgCGCCGGag-CUUGaaGCAGU----UGG- -5'
21434 5' -51.9 NC_004812.1 + 43801 0.66 0.991862
Target:  5'- cUGCGCcauGGCCUCGAccgACacauUCGACCg -3'
miRNA:   3'- cAUGCG---CCGGAGCU---UGaagcAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 107312 0.66 0.991862
Target:  5'- aGUugGCGcacagcGCCUCGAGgUugUUGUC-GCCg -3'
miRNA:   3'- -CAugCGC------CGGAGCUUgA--AGCAGuUGG- -5'
21434 5' -51.9 NC_004812.1 + 87054 0.66 0.991862
Target:  5'- -gGCGCGGCCggcgccgCGGGCaggggcgCGggggggCGGCCg -3'
miRNA:   3'- caUGCGCCGGa------GCUUGaa-----GCa-----GUUGG- -5'
21434 5' -51.9 NC_004812.1 + 17617 0.66 0.990693
Target:  5'- -cGCGcCGGCCUCGugucCUgguggUCGUCGgacgcGCCc -3'
miRNA:   3'- caUGC-GCCGGAGCuu--GA-----AGCAGU-----UGG- -5'
21434 5' -51.9 NC_004812.1 + 38974 0.66 0.990693
Target:  5'- -cACGuCGGCCUCcg----UGUCGGCCa -3'
miRNA:   3'- caUGC-GCCGGAGcuugaaGCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 120970 0.66 0.990693
Target:  5'- -cGCGCGcGCC-CGcGGCa-CGUCAACCc -3'
miRNA:   3'- caUGCGC-CGGaGC-UUGaaGCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 154868 0.66 0.990693
Target:  5'- -gGCGCGGgCUCGGGCcgCGgaggCGcgcgggGCCg -3'
miRNA:   3'- caUGCGCCgGAGCUUGaaGCa---GU------UGG- -5'
21434 5' -51.9 NC_004812.1 + 138525 0.66 0.990693
Target:  5'- uGUGCgGCGGCC-CGGACggCGgcUCggUCu -3'
miRNA:   3'- -CAUG-CGCCGGaGCUUGaaGC--AGuuGG- -5'
21434 5' -51.9 NC_004812.1 + 149601 0.66 0.990693
Target:  5'- uGUGCGCcgacccGCCgcggCGAugUUCGUgCGACg -3'
miRNA:   3'- -CAUGCGc-----CGGa---GCUugAAGCA-GUUGg -5'
21434 5' -51.9 NC_004812.1 + 29360 0.66 0.990693
Target:  5'- -gGCGCGGgCUCGGGCcgCGgaggCGcgcgggGCCg -3'
miRNA:   3'- caUGCGCCgGAGCUUGaaGCa---GU------UGG- -5'
21434 5' -51.9 NC_004812.1 + 120175 0.66 0.990693
Target:  5'- -aACGCGGCCgCGGucuuccuacgcaACgccgUCGUCGcgggcaACCg -3'
miRNA:   3'- caUGCGCCGGaGCU------------UGa---AGCAGU------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.