miRNA display CGI


Results 1 - 20 of 515 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 82686 0.66 0.924326
Target:  5'- --gGGCGAGCaggCGCCGcUGGGCGccggccgacggcggcUCGCc -3'
miRNA:   3'- aaaCUGCUCG---GCGGCuGCCUGU---------------AGCG- -5'
21439 5' -56 NC_004812.1 + 57740 0.66 0.92214
Target:  5'- --cGAUGAcGCCGUCGAgcugggccCGGAUGgagCGCa -3'
miRNA:   3'- aaaCUGCU-CGGCGGCU--------GCCUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 22675 0.66 0.92214
Target:  5'- --cGGCggGAGCC-CCGAgCGGACccCGCg -3'
miRNA:   3'- aaaCUG--CUCGGcGGCU-GCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 37918 0.66 0.92214
Target:  5'- -cUGACGAGCacuGCgUGACGaGGCG-CGCc -3'
miRNA:   3'- aaACUGCUCGg--CG-GCUGC-CUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 3493 0.66 0.92214
Target:  5'- --cGGCGGGCCGCgGgcGCGGGCccGggGCc -3'
miRNA:   3'- aaaCUGCUCGGCGgC--UGCCUG--UagCG- -5'
21439 5' -56 NC_004812.1 + 54519 0.66 0.92214
Target:  5'- -gUGGCcGGCC-UCGACGGACG-CGUu -3'
miRNA:   3'- aaACUGcUCGGcGGCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 50574 0.66 0.92214
Target:  5'- -gUGGcCGAG-CGCCGGCGG-CAggccgggaUCGCc -3'
miRNA:   3'- aaACU-GCUCgGCGGCUGCCuGU--------AGCG- -5'
21439 5' -56 NC_004812.1 + 144058 0.66 0.92214
Target:  5'- --cGGCGGcacGCCGCCGG-GGGCcUgGCg -3'
miRNA:   3'- aaaCUGCU---CGGCGGCUgCCUGuAgCG- -5'
21439 5' -56 NC_004812.1 + 8595 0.66 0.92214
Target:  5'- -gUGGCGcGCCGCC--CGGAgGcCGCg -3'
miRNA:   3'- aaACUGCuCGGCGGcuGCCUgUaGCG- -5'
21439 5' -56 NC_004812.1 + 22974 0.66 0.92214
Target:  5'- --cGGCGAcGCUgauGCUGGCGGugGcCGCc -3'
miRNA:   3'- aaaCUGCU-CGG---CGGCUGCCugUaGCG- -5'
21439 5' -56 NC_004812.1 + 103219 0.66 0.92214
Target:  5'- --gGACGAGCggcagguucaggCGCUcGCGGACGuaguugaucUCGCg -3'
miRNA:   3'- aaaCUGCUCG------------GCGGcUGCCUGU---------AGCG- -5'
21439 5' -56 NC_004812.1 + 63012 0.66 0.92214
Target:  5'- ---cGCGGGCCGCCGcguccGCGaGCG-CGCg -3'
miRNA:   3'- aaacUGCUCGGCGGC-----UGCcUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 129001 0.66 0.92214
Target:  5'- --cGGCGGGCCGCgGgcGCGGGCccGggGCc -3'
miRNA:   3'- aaaCUGCUCGGCGgC--UGCCUG--UagCG- -5'
21439 5' -56 NC_004812.1 + 102054 0.66 0.92214
Target:  5'- -aUGGCGAgGCCgggGCCGcgcCGGGCG-CGCc -3'
miRNA:   3'- aaACUGCU-CGG---CGGCu--GCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 52896 0.66 0.92214
Target:  5'- --cGACGGuGCaggGCuCGA-GGGCGUCGCg -3'
miRNA:   3'- aaaCUGCU-CGg--CG-GCUgCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 39496 0.66 0.92214
Target:  5'- -gUGGCGcGCCGCC--CGGAgGcCGCg -3'
miRNA:   3'- aaACUGCuCGGCGGcuGCCUgUaGCG- -5'
21439 5' -56 NC_004812.1 + 108628 0.66 0.92214
Target:  5'- --aGGCGcgcgugcuGGCCGCCuaccGGCGGGCGUacuacggcagCGCg -3'
miRNA:   3'- aaaCUGC--------UCGGCGG----CUGCCUGUA----------GCG- -5'
21439 5' -56 NC_004812.1 + 106201 0.66 0.92214
Target:  5'- ----cCGGGUggcuaUGCCGACGGACuucugCGCg -3'
miRNA:   3'- aaacuGCUCG-----GCGGCUGCCUGua---GCG- -5'
21439 5' -56 NC_004812.1 + 45308 0.66 0.92214
Target:  5'- gUUGGCGGGCagGCCGAgcaGGGCGgucUUGUu -3'
miRNA:   3'- aAACUGCUCGg-CGGCUg--CCUGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 142386 0.66 0.92214
Target:  5'- --cGGCGcgccguGGCCGCCGG-GGGCGggGCc -3'
miRNA:   3'- aaaCUGC------UCGGCGGCUgCCUGUagCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.