miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21444 5' -59.9 NC_004812.1 + 137892 0.66 0.792072
Target:  5'- gCGGCG-CCCCag-CGCCgcggAGCuacuGCGGc -3'
miRNA:   3'- -GCCGCaGGGGgcaGCGGa---UCGu---UGCU- -5'
21444 5' -59.9 NC_004812.1 + 59888 0.66 0.792072
Target:  5'- gCGGCccggCCCUCGUgGCCcGGCAccGCGu -3'
miRNA:   3'- -GCCGca--GGGGGCAgCGGaUCGU--UGCu -5'
21444 5' -59.9 NC_004812.1 + 23415 0.66 0.792072
Target:  5'- gGGCGUCCggCGgCGUC-GGCGACGAc -3'
miRNA:   3'- gCCGCAGGggGCaGCGGaUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 36506 0.66 0.792072
Target:  5'- gCGGgGUCCCCCaGgggGCCggaGGCGGCu- -3'
miRNA:   3'- -GCCgCAGGGGG-Cag-CGGa--UCGUUGcu -5'
21444 5' -59.9 NC_004812.1 + 62876 0.66 0.792072
Target:  5'- gCGGCGg-CCCCGUCuGCCgcggAGCc-CGGc -3'
miRNA:   3'- -GCCGCagGGGGCAG-CGGa---UCGuuGCU- -5'
21444 5' -59.9 NC_004812.1 + 145539 0.66 0.792072
Target:  5'- gCGGCG-CCCCgGuUCGCgCUGGUccCGGg -3'
miRNA:   3'- -GCCGCaGGGGgC-AGCG-GAUCGuuGCU- -5'
21444 5' -59.9 NC_004812.1 + 5605 0.66 0.792072
Target:  5'- gCGGgGUCCCCCaGgggGCCggaGGCGGCu- -3'
miRNA:   3'- -GCCgCAGGGGG-Cag-CGGa--UCGUUGcu -5'
21444 5' -59.9 NC_004812.1 + 148923 0.66 0.792072
Target:  5'- gGGCGUCCggCGgCGUC-GGCGACGAc -3'
miRNA:   3'- gCCGCAGGggGCaGCGGaUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 50265 0.66 0.792072
Target:  5'- uCGGUGUCgcugucgaCCCGgCGCCUGGaggagGGCGAg -3'
miRNA:   3'- -GCCGCAGg-------GGGCaGCGGAUCg----UUGCU- -5'
21444 5' -59.9 NC_004812.1 + 59891 0.66 0.788558
Target:  5'- aCGGCGagCCCUaUCGCCgccgcggaccccGCGGCGAu -3'
miRNA:   3'- -GCCGCagGGGGcAGCGGau----------CGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 47157 0.66 0.788558
Target:  5'- gGGCG-CCCCCG-CGCCgcccucucccuCGGCGGg -3'
miRNA:   3'- gCCGCaGGGGGCaGCGGauc--------GUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 56564 0.66 0.786793
Target:  5'- gGGUGaCCCCCGcucggacgcgcggcCGCCaugcAGCGACGAu -3'
miRNA:   3'- gCCGCaGGGGGCa-------------GCGGa---UCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 128260 0.66 0.783247
Target:  5'- gCGGCGggCCagcggaCGUCGCaCUGcGCGGCGGg -3'
miRNA:   3'- -GCCGCagGGg-----GCAGCG-GAU-CGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 105007 0.66 0.783247
Target:  5'- gCGGCGcCCCUCG-CGCCccGCGGugcCGAc -3'
miRNA:   3'- -GCCGCaGGGGGCaGCGGauCGUU---GCU- -5'
21444 5' -59.9 NC_004812.1 + 54625 0.66 0.783247
Target:  5'- uCGcGCGacCCCCCG-CGCg-GGCGGCGGg -3'
miRNA:   3'- -GC-CGCa-GGGGGCaGCGgaUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 39497 0.66 0.783247
Target:  5'- uGGCGcgCCgCCCGgaggccgCGCCUcccGGUAAUGGa -3'
miRNA:   3'- gCCGCa-GG-GGGCa------GCGGA---UCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 8596 0.66 0.783247
Target:  5'- uGGCGcgCCgCCCGgaggccgCGCCUcccGGUAAUGGa -3'
miRNA:   3'- gCCGCa-GG-GGGCa------GCGGA---UCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 85399 0.66 0.783247
Target:  5'- gCGGcCGcCCgCUCGcCGCCUGGC-GCGGc -3'
miRNA:   3'- -GCC-GCaGG-GGGCaGCGGAUCGuUGCU- -5'
21444 5' -59.9 NC_004812.1 + 2752 0.66 0.783247
Target:  5'- gCGGCGggCCagcggaCGUCGCaCUGcGCGGCGGg -3'
miRNA:   3'- -GCCGCagGGg-----GCAGCG-GAU-CGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 27280 0.66 0.783247
Target:  5'- gCGGgGaCCuCCgCGUCGCC-GGCGGCGc -3'
miRNA:   3'- -GCCgCaGG-GG-GCAGCGGaUCGUUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.