miRNA display CGI


Results 1 - 20 of 908 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21446 5' -58 NC_004812.1 + 128706 0.66 0.868874
Target:  5'- gGCgGcgGCGCG-GCGCaGCGggcccgagGCGCGCg -3'
miRNA:   3'- aCGgCa-UGUGCaCGUGcCGC--------UGCGCG- -5'
21446 5' -58 NC_004812.1 + 4833 0.66 0.868874
Target:  5'- cGUCGgcguccagggGCACGgccCGCGGCGGCGCn- -3'
miRNA:   3'- aCGGCa---------UGUGCac-GUGCCGCUGCGcg -5'
21446 5' -58 NC_004812.1 + 145922 0.66 0.868874
Target:  5'- cGCCcccguGUACcuggugACGUGguUGGCGcUGCGCu -3'
miRNA:   3'- aCGG-----CAUG------UGCACguGCCGCuGCGCG- -5'
21446 5' -58 NC_004812.1 + 4673 0.66 0.868874
Target:  5'- gGCCGU-CGCGcGC-CGGCGccgaggggaGCGCc -3'
miRNA:   3'- aCGGCAuGUGCaCGuGCCGCug-------CGCG- -5'
21446 5' -58 NC_004812.1 + 43310 0.66 0.868874
Target:  5'- gUGCCGUugggaaacaGCAgGaGCGCGGUugagggGACGuCGCu -3'
miRNA:   3'- -ACGGCA---------UGUgCaCGUGCCG------CUGC-GCG- -5'
21446 5' -58 NC_004812.1 + 156167 0.66 0.868874
Target:  5'- gGcCCGggcuCGCGgcggGCGCGcGCGAgagcgcCGCGCg -3'
miRNA:   3'- aC-GGCau--GUGCa---CGUGC-CGCU------GCGCG- -5'
21446 5' -58 NC_004812.1 + 154079 0.66 0.868874
Target:  5'- cGCCGcGC-CGUGCugcccgcgcucgACGGCcGCGcCGCc -3'
miRNA:   3'- aCGGCaUGuGCACG------------UGCCGcUGC-GCG- -5'
21446 5' -58 NC_004812.1 + 137765 0.66 0.868874
Target:  5'- cGCaGUAC-CGc-CACcgGGCGGCGCGCa -3'
miRNA:   3'- aCGgCAUGuGCacGUG--CCGCUGCGCG- -5'
21446 5' -58 NC_004812.1 + 155590 0.66 0.868874
Target:  5'- gGCCGggcccuCGCGgggGCGCGGCcccGGcCGgGCa -3'
miRNA:   3'- aCGGCau----GUGCa--CGUGCCG---CU-GCgCG- -5'
21446 5' -58 NC_004812.1 + 54383 0.66 0.868874
Target:  5'- gGCCGUcggGCGCccgcggGCACGGcCGGgGCuGCu -3'
miRNA:   3'- aCGGCA---UGUGca----CGUGCC-GCUgCG-CG- -5'
21446 5' -58 NC_004812.1 + 130972 0.66 0.868874
Target:  5'- gGCCGcccGCGCGcUGCuguuccgcuacuGCGuGgGGCGCGCc -3'
miRNA:   3'- aCGGCa--UGUGC-ACG------------UGC-CgCUGCGCG- -5'
21446 5' -58 NC_004812.1 + 11693 0.66 0.868874
Target:  5'- -uCCGUACACG-GUgACGGUGAUGUa- -3'
miRNA:   3'- acGGCAUGUGCaCG-UGCCGCUGCGcg -5'
21446 5' -58 NC_004812.1 + 62370 0.66 0.868874
Target:  5'- gGUCG-GCGCGaaccccagGC-CGGCGACGCcgGCg -3'
miRNA:   3'- aCGGCaUGUGCa-------CGuGCCGCUGCG--CG- -5'
21446 5' -58 NC_004812.1 + 3197 0.66 0.868874
Target:  5'- gGCgGcgGCGCG-GCGCaGCGggcccgagGCGCGCg -3'
miRNA:   3'- aCGgCa-UGUGCaCGUGcCGC--------UGCGCG- -5'
21446 5' -58 NC_004812.1 + 130341 0.66 0.868874
Target:  5'- cGUCGgcguccagggGCACGgccCGCGGCGGCGCn- -3'
miRNA:   3'- aCGGCa---------UGUGCac-GUGCCGCUGCGcg -5'
21446 5' -58 NC_004812.1 + 145731 0.66 0.868874
Target:  5'- cGcCCGaACGCG-GCGaccCGG-GGCGCGCg -3'
miRNA:   3'- aC-GGCaUGUGCaCGU---GCCgCUGCGCG- -5'
21446 5' -58 NC_004812.1 + 144446 0.66 0.868874
Target:  5'- cGCCGUuCugGgGCccCGaCGGCGCGCc -3'
miRNA:   3'- aCGGCAuGugCaCGu-GCcGCUGCGCG- -5'
21446 5' -58 NC_004812.1 + 109447 0.66 0.868874
Target:  5'- cGCCGagggagaGgGCG-GCGCGGgGGCGCccGCg -3'
miRNA:   3'- aCGGCa------UgUGCaCGUGCCgCUGCG--CG- -5'
21446 5' -58 NC_004812.1 + 77160 0.66 0.868874
Target:  5'- gGCCGgcaGCcCGccCGCGGCGGCGcCGUc -3'
miRNA:   3'- aCGGCa--UGuGCacGUGCCGCUGC-GCG- -5'
21446 5' -58 NC_004812.1 + 125266 0.66 0.868874
Target:  5'- gGcCCGggcuCGCGgcggGCGCGcGCGAgagcgcCGCGCg -3'
miRNA:   3'- aC-GGCau--GUGCa---CGUGC-CGCU------GCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.