miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21452 5' -56.4 NC_004812.1 + 78763 0.66 0.912975
Target:  5'- aCCGGGAgGUGCgcggcgcccuggacgCCCUggcGCGGGGCgUGg -3'
miRNA:   3'- -GGUCCUgUAUG---------------GGGA---CGUCCUGgACg -5'
21452 5' -56.4 NC_004812.1 + 152189 0.66 0.911204
Target:  5'- cCCGGGGCc-GCCUCgggcaggcgagugcgGCGGGACCacccggGCg -3'
miRNA:   3'- -GGUCCUGuaUGGGGa--------------CGUCCUGGa-----CG- -5'
21452 5' -56.4 NC_004812.1 + 121288 0.66 0.911204
Target:  5'- cCCGGGGCc-GCCUCgggcaggcgagugcgGCGGGACCacccggGCg -3'
miRNA:   3'- -GGUCCUGuaUGGGGa--------------CGUCCUGGa-----CG- -5'
21452 5' -56.4 NC_004812.1 + 44636 0.66 0.910609
Target:  5'- -gGGGGCcgcgGCCCCUucuccgaccccgGCGGGGCCgacucGCc -3'
miRNA:   3'- ggUCCUGua--UGGGGA------------CGUCCUGGa----CG- -5'
21452 5' -56.4 NC_004812.1 + 152782 0.66 0.910609
Target:  5'- -aGGGGCGggGCCUgggGCGGGGCCgcagGCc -3'
miRNA:   3'- ggUCCUGUa-UGGGga-CGUCCUGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 52665 0.66 0.910609
Target:  5'- cCCGGcGGCccucuauaACCgCCUGCucgAGGACCUGg -3'
miRNA:   3'- -GGUC-CUGua------UGG-GGACG---UCCUGGACg -5'
21452 5' -56.4 NC_004812.1 + 75537 0.66 0.910609
Target:  5'- cCCAGGcGCGUGgCCgaGUucguccGGGAgCUGCa -3'
miRNA:   3'- -GGUCC-UGUAUgGGgaCG------UCCUgGACG- -5'
21452 5' -56.4 NC_004812.1 + 27260 0.66 0.910609
Target:  5'- gCuGGugcuCAUGCgCCUGCgcgGGGACCUccGCg -3'
miRNA:   3'- gGuCCu---GUAUGgGGACG---UCCUGGA--CG- -5'
21452 5' -56.4 NC_004812.1 + 105306 0.66 0.910609
Target:  5'- gUAGGGC-UGCCCgUaCGGGGCCgcccGCg -3'
miRNA:   3'- gGUCCUGuAUGGGgAcGUCCUGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 22667 0.66 0.910609
Target:  5'- cCCGGGGCcggcgggaGCCCCgaGC-GGACCccGCg -3'
miRNA:   3'- -GGUCCUGua------UGGGGa-CGuCCUGGa-CG- -5'
21452 5' -56.4 NC_004812.1 + 36718 0.66 0.910609
Target:  5'- gCGGGGCGcggcgGgCUCUGCGGG-CCgGCg -3'
miRNA:   3'- gGUCCUGUa----UgGGGACGUCCuGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 113324 0.66 0.910609
Target:  5'- cCCcGGACA-GCCCCUGgGcuccGGugCUGg -3'
miRNA:   3'- -GGuCCUGUaUGGGGACgU----CCugGACg -5'
21452 5' -56.4 NC_004812.1 + 5817 0.66 0.910609
Target:  5'- gCGGGGCGcggcgGgCUCUGCGGG-CCgGCg -3'
miRNA:   3'- gGUCCUGUa----UgGGGACGUCCuGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 95435 0.66 0.910609
Target:  5'- gCCGGGugGcGCgCC-GCGGGuucggGCCUGUg -3'
miRNA:   3'- -GGUCCugUaUGgGGaCGUCC-----UGGACG- -5'
21452 5' -56.4 NC_004812.1 + 121881 0.66 0.910609
Target:  5'- -aGGGGCGggGCCUgggGCGGGGCCgcagGCc -3'
miRNA:   3'- ggUCCUGUa-UGGGga-CGUCCUGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 152768 0.66 0.910609
Target:  5'- gCuGGugcuCAUGCgCCUGCgcgGGGACCUccGCg -3'
miRNA:   3'- gGuCCu---GUAUGgGGACG---UCCUGGA--CG- -5'
21452 5' -56.4 NC_004812.1 + 30279 0.66 0.910012
Target:  5'- cCCAGGGCGcAgcacgccgaggggUCCCUG-GGGACCUccGCg -3'
miRNA:   3'- -GGUCCUGUaU-------------GGGGACgUCCUGGA--CG- -5'
21452 5' -56.4 NC_004812.1 + 125505 0.66 0.910012
Target:  5'- uUCuGGACGccccgccgcccaaUGCCaCCcGCAGGGUCUGCg -3'
miRNA:   3'- -GGuCCUGU-------------AUGG-GGaCGUCCUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 31959 0.66 0.910012
Target:  5'- gUCAGGACGUcgcccaggaucucGCCCCccggccgcgGCAGGuCC-GCc -3'
miRNA:   3'- -GGUCCUGUA-------------UGGGGa--------CGUCCuGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 73069 0.66 0.904532
Target:  5'- cCCGGaGACcgcGCUCCUcGCGgagaacuuaccGGGCCUGCu -3'
miRNA:   3'- -GGUC-CUGua-UGGGGA-CGU-----------CCUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.