miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21457 3' -55.9 NC_004812.1 + 121813 0.66 0.930925
Target:  5'- cGGgGGCGGccucGGAGGcgGAGGCCGgGCGc -3'
miRNA:   3'- -CUgCCGCCac--CCUCU--UUCUGGUgUGC- -5'
21457 3' -55.9 NC_004812.1 + 99237 0.66 0.930925
Target:  5'- cGGCGGgGGcGGGGGccguccgggccGGAGGCaCGCACc -3'
miRNA:   3'- -CUGCCgCCaCCCUC-----------UUUCUG-GUGUGc -5'
21457 3' -55.9 NC_004812.1 + 54871 0.66 0.930925
Target:  5'- -gUGGCGGgcacGGGGGAcccAGGGCC-CGCc -3'
miRNA:   3'- cuGCCGCCa---CCCUCU---UUCUGGuGUGc -5'
21457 3' -55.9 NC_004812.1 + 121954 0.66 0.930925
Target:  5'- gGGCGGCGGgcUGGGccuGAGcggcGGGCCuggGCugGg -3'
miRNA:   3'- -CUGCCGCC--ACCCu--CUU----UCUGG---UGugC- -5'
21457 3' -55.9 NC_004812.1 + 12119 0.66 0.930925
Target:  5'- -cCGGCGucgGGGGGGuuGGGGgCGCGCGg -3'
miRNA:   3'- cuGCCGCca-CCCUCU--UUCUgGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 152855 0.66 0.930925
Target:  5'- gGGCGGCGGgcUGGGccuGAGcggcGGGCCuggGCugGg -3'
miRNA:   3'- -CUGCCGCC--ACCCu--CUU----UCUGG---UGugC- -5'
21457 3' -55.9 NC_004812.1 + 87279 0.66 0.930925
Target:  5'- --gGGCGG-GGGuc-GAGGCCgACGCGg -3'
miRNA:   3'- cugCCGCCaCCCucuUUCUGG-UGUGC- -5'
21457 3' -55.9 NC_004812.1 + 16853 0.66 0.930925
Target:  5'- aGGCGcGCGGUcgcGGGGGAccgcGACCugGuCGg -3'
miRNA:   3'- -CUGC-CGCCA---CCCUCUuu--CUGGugU-GC- -5'
21457 3' -55.9 NC_004812.1 + 100870 0.66 0.930925
Target:  5'- cGCGGgGGaggcGGGGGAGGGcGCCGCGg- -3'
miRNA:   3'- cUGCCgCCa---CCCUCUUUC-UGGUGUgc -5'
21457 3' -55.9 NC_004812.1 + 152714 0.66 0.930925
Target:  5'- cGGgGGCGGccucGGAGGcgGAGGCCGgGCGc -3'
miRNA:   3'- -CUgCCGCCac--CCUCU--UUCUGGUgUGC- -5'
21457 3' -55.9 NC_004812.1 + 96297 0.66 0.930925
Target:  5'- cGACGGCGGccaGGGcaaggcccccaAGggGGGgCGCgACGg -3'
miRNA:   3'- -CUGCCGCCa--CCC-----------UCuuUCUgGUG-UGC- -5'
21457 3' -55.9 NC_004812.1 + 34452 0.66 0.92782
Target:  5'- gGAUGGUcGUGGGAGGgggaagggaacgaccGAGACggucgCGCGCGg -3'
miRNA:   3'- -CUGCCGcCACCCUCU---------------UUCUG-----GUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 30985 0.66 0.92782
Target:  5'- -uUGGCGGUGaacgcaaagccgccGGGGAAGACCACGa- -3'
miRNA:   3'- cuGCCGCCACc-------------CUCUUUCUGGUGUgc -5'
21457 3' -55.9 NC_004812.1 + 18104 0.66 0.925702
Target:  5'- cGugGuaCGuGUGGGAGuagcGGCCGCACGu -3'
miRNA:   3'- -CugCc-GC-CACCCUCuuu-CUGGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 59262 0.66 0.925702
Target:  5'- uGGCGGCGGUGcGcGGGAucagggucgcGGgCGCGCGg -3'
miRNA:   3'- -CUGCCGCCAC-C-CUCUuu--------CUgGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 146803 0.66 0.925702
Target:  5'- cGAgGGCGGcUGGGAaucGAAGGucacuCC-CGCGg -3'
miRNA:   3'- -CUgCCGCC-ACCCU---CUUUCu----GGuGUGC- -5'
21457 3' -55.9 NC_004812.1 + 69736 0.66 0.925702
Target:  5'- aGGCGGCGGUccggcaccGGGGGGcaccAGugCGCucGCGc -3'
miRNA:   3'- -CUGCCGCCA--------CCCUCUu---UCugGUG--UGC- -5'
21457 3' -55.9 NC_004812.1 + 61388 0.66 0.925702
Target:  5'- gGGCGGCGG-GGuGAGGgaaaccccaAGGACCuccgagggacccGCGCGc -3'
miRNA:   3'- -CUGCCGCCaCC-CUCU---------UUCUGG------------UGUGC- -5'
21457 3' -55.9 NC_004812.1 + 5682 0.66 0.925702
Target:  5'- cACGGgGGgccGGGGGucucccAGGGCCACGgGg -3'
miRNA:   3'- cUGCCgCCa--CCCUCu-----UUCUGGUGUgC- -5'
21457 3' -55.9 NC_004812.1 + 104673 0.66 0.925702
Target:  5'- uGCGGgGGUGGGAcaggucccacaGcuGGGCCGC-CGc -3'
miRNA:   3'- cUGCCgCCACCCU-----------CuuUCUGGUGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.