miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21457 5' -64.8 NC_004812.1 + 38553 0.66 0.555585
Target:  5'- gGGCGCgaaGCUGcG-GgCCCgCGG-GCCGGg -3'
miRNA:   3'- -UCGCG---UGAC-CaCgGGGgGCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 37322 0.66 0.555585
Target:  5'- cGGCGCGCcGuacaGCCCgCCCGGcggggggaccGCCGGg -3'
miRNA:   3'- -UCGCGUGaCca--CGGG-GGGCCa---------CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 152644 0.66 0.555585
Target:  5'- cGGCGCGCggcgGGggggcgccgGgCCUCCGGgagGCgGGg -3'
miRNA:   3'- -UCGCGUGa---CCa--------CgGGGGGCCa--CGgCC- -5'
21457 5' -64.8 NC_004812.1 + 39812 0.66 0.555585
Target:  5'- --gGCAC-GGUGCCCugCuuGGgGCCGGu -3'
miRNA:   3'- ucgCGUGaCCACGGG--GggCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 100317 0.66 0.555585
Target:  5'- cGCGUGCUGGaccagGCCCUCgagCGG-GCCGc -3'
miRNA:   3'- uCGCGUGACCa----CGGGGG---GCCaCGGCc -5'
21457 5' -64.8 NC_004812.1 + 38928 0.66 0.555585
Target:  5'- gGGCGCgggccggccuccGCcGGcaCCCCCCGGcgcccgGCCGGc -3'
miRNA:   3'- -UCGCG------------UGaCCacGGGGGGCCa-----CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 8027 0.66 0.555585
Target:  5'- gGGCGCgggccggccuccGCcGGcaCCCCCCGGcgcccgGCCGGc -3'
miRNA:   3'- -UCGCG------------UGaCCacGGGGGGCCa-----CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 6421 0.66 0.555585
Target:  5'- cGGCGCGCcGuacaGCCCgCCCGGcggggggaccGCCGGg -3'
miRNA:   3'- -UCGCGUGaCca--CGGG-GGGCCa---------CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 59192 0.66 0.555585
Target:  5'- cAGCGgGCaGG-GCCCgCCGGcgUGCgGGu -3'
miRNA:   3'- -UCGCgUGaCCaCGGGgGGCC--ACGgCC- -5'
21457 5' -64.8 NC_004812.1 + 8911 0.66 0.555585
Target:  5'- --gGCAC-GGUGCCCugCuuGGgGCCGGu -3'
miRNA:   3'- ucgCGUGaCCACGGG--GggCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 56439 0.66 0.555585
Target:  5'- aGGCGC-CgGGcgaucgucGCCCCCUGGUugGCCGu -3'
miRNA:   3'- -UCGCGuGaCCa-------CGGGGGGCCA--CGGCc -5'
21457 5' -64.8 NC_004812.1 + 7652 0.66 0.555585
Target:  5'- gGGCGCgaaGCUGcG-GgCCCgCGG-GCCGGg -3'
miRNA:   3'- -UCGCG---UGAC-CaCgGGGgGCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 59719 0.66 0.554643
Target:  5'- cGGCGagGC-GG-GCCCCCgGGUcgucuggguuccgGCCGGg -3'
miRNA:   3'- -UCGCg-UGaCCaCGGGGGgCCA-------------CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 140101 0.66 0.553702
Target:  5'- gAGCGCAUcgcccccgcGCCCCCCGGccggUGgCGGa -3'
miRNA:   3'- -UCGCGUGacca-----CGGGGGGCC----ACgGCC- -5'
21457 5' -64.8 NC_004812.1 + 80219 0.66 0.546188
Target:  5'- gGGCGaACUGGUuCCuggCCCCGGUGaCCa- -3'
miRNA:   3'- -UCGCgUGACCAcGG---GGGGCCAC-GGcc -5'
21457 5' -64.8 NC_004812.1 + 62830 0.66 0.546188
Target:  5'- gGGCGUACaGGccguUGCggguuucgCCCCGG-GCCGGa -3'
miRNA:   3'- -UCGCGUGaCC----ACGg-------GGGGCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 145024 0.66 0.546188
Target:  5'- cGCGCgGCgucccucCCCCCCGGUGCCc- -3'
miRNA:   3'- uCGCG-UGaccac--GGGGGGCCACGGcc -5'
21457 5' -64.8 NC_004812.1 + 77630 0.66 0.546188
Target:  5'- uGGCGCugUaaaccGCCCCCCGGUGgaaguacucCCGc -3'
miRNA:   3'- -UCGCGugAcca--CGGGGGGCCAC---------GGCc -5'
21457 5' -64.8 NC_004812.1 + 51837 0.66 0.546188
Target:  5'- cGGCcCcCUGGa-CCCCCCGcGUcGCCGGg -3'
miRNA:   3'- -UCGcGuGACCacGGGGGGC-CA-CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 130033 0.66 0.546188
Target:  5'- aGGcCGCuccugguuCUGGUGUCCCgCCuGUGCCa- -3'
miRNA:   3'- -UC-GCGu-------GACCACGGGG-GGcCACGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.