miRNA display CGI


Results 1 - 20 of 1571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21458 3' -66.8 NC_004812.1 + 144497 0.66 0.47664
Target:  5'- aCGGGaCGCuGGUCcUGCGCgaGGCGCg -3'
miRNA:   3'- cGCCCgGCG-UCGGuGCGCGggCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 22729 0.66 0.47664
Target:  5'- -aGGGCgaCG-AGCCcgucuCGCGCgCGGCGUg -3'
miRNA:   3'- cgCCCG--GCgUCGGu----GCGCGgGCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 19069 0.66 0.47664
Target:  5'- cCGcGGCCcaGGCC-CGCGCCgGGCcgaGCg -3'
miRNA:   3'- cGC-CCGGcgUCGGuGCGCGGgCCG---CG- -5'
21458 3' -66.8 NC_004812.1 + 109021 0.66 0.47664
Target:  5'- -gGGGUCGCcGCgACcccgaGCGCCCuccGCGCu -3'
miRNA:   3'- cgCCCGGCGuCGgUG-----CGCGGGc--CGCG- -5'
21458 3' -66.8 NC_004812.1 + 81379 0.66 0.47664
Target:  5'- aGCGcGCCGaGGCCAccgacCGCGUCaCGGcCGCc -3'
miRNA:   3'- -CGCcCGGCgUCGGU-----GCGCGG-GCC-GCG- -5'
21458 3' -66.8 NC_004812.1 + 123500 0.66 0.47664
Target:  5'- gGCGGGCCG-GGCCGgG-GCUCcaaGGcCGCg -3'
miRNA:   3'- -CGCCCGGCgUCGGUgCgCGGG---CC-GCG- -5'
21458 3' -66.8 NC_004812.1 + 66217 0.66 0.47664
Target:  5'- gGCGGuCCGCcaggacAGCCAgCGagGCCaggaaGGCGCg -3'
miRNA:   3'- -CGCCcGGCG------UCGGU-GCg-CGGg----CCGCG- -5'
21458 3' -66.8 NC_004812.1 + 112611 0.66 0.47664
Target:  5'- uGCuGGCCuCGGCCAUGUGCaCCuccgacguGGCGg -3'
miRNA:   3'- -CGcCCGGcGUCGGUGCGCG-GG--------CCGCg -5'
21458 3' -66.8 NC_004812.1 + 125032 0.66 0.47664
Target:  5'- cCGGGgaCGC-GCUccccucGCGcCGCCCGGgCGCg -3'
miRNA:   3'- cGCCCg-GCGuCGG------UGC-GCGGGCC-GCG- -5'
21458 3' -66.8 NC_004812.1 + 97055 0.66 0.47664
Target:  5'- cGCGaGGCCcaGCgauGGUCGCGCuggguCCCGaGCGCc -3'
miRNA:   3'- -CGC-CCGG--CG---UCGGUGCGc----GGGC-CGCG- -5'
21458 3' -66.8 NC_004812.1 + 135224 0.66 0.47664
Target:  5'- gGCGagacGGCCGCGGCgcggagcuCGCGCgucuacGCCCGGUu- -3'
miRNA:   3'- -CGC----CCGGCGUCG--------GUGCG------CGGGCCGcg -5'
21458 3' -66.8 NC_004812.1 + 70545 0.66 0.47664
Target:  5'- -gGGGgUGgGGCCacaaGCGgGCCUGGgGCu -3'
miRNA:   3'- cgCCCgGCgUCGG----UGCgCGGGCCgCG- -5'
21458 3' -66.8 NC_004812.1 + 17780 0.66 0.47664
Target:  5'- uGCGGGgacaCGCAGCgGCGUcccUCCGGCcCg -3'
miRNA:   3'- -CGCCCg---GCGUCGgUGCGc--GGGCCGcG- -5'
21458 3' -66.8 NC_004812.1 + 69145 0.66 0.47664
Target:  5'- gGCGaGGUCcgagugGCAcGCCAgGUGUCCGGCa- -3'
miRNA:   3'- -CGC-CCGG------CGU-CGGUgCGCGGGCCGcg -5'
21458 3' -66.8 NC_004812.1 + 73202 0.66 0.47664
Target:  5'- gGCGGGgccgggacguccUCGCGGCCgcccuGCGgGUCgGGCGg -3'
miRNA:   3'- -CGCCC------------GGCGUCGG-----UGCgCGGgCCGCg -5'
21458 3' -66.8 NC_004812.1 + 129871 0.66 0.47664
Target:  5'- gGCGacGGCgGCGGCgGCGUGCgCCaGGCc- -3'
miRNA:   3'- -CGC--CCGgCGUCGgUGCGCG-GG-CCGcg -5'
21458 3' -66.8 NC_004812.1 + 99453 0.66 0.47664
Target:  5'- gGUGGaCCGC-GUCGCGCaGCCCcagcaccgcggcGGCGUa -3'
miRNA:   3'- -CGCCcGGCGuCGGUGCG-CGGG------------CCGCG- -5'
21458 3' -66.8 NC_004812.1 + 127505 0.66 0.47664
Target:  5'- gGCGGGUC-CcGCCgGCGguCGCUCGGgGCg -3'
miRNA:   3'- -CGCCCGGcGuCGG-UGC--GCGGGCCgCG- -5'
21458 3' -66.8 NC_004812.1 + 4363 0.66 0.47664
Target:  5'- gGCGacGGCgGCGGCgGCGUGCgCCaGGCc- -3'
miRNA:   3'- -CGC--CCGgCGUCGgUGCGCG-GG-CCGcg -5'
21458 3' -66.8 NC_004812.1 + 13079 0.66 0.47664
Target:  5'- cGCGGGUCaGCGcccCCAUGCGCUCGuaCGCn -3'
miRNA:   3'- -CGCCCGG-CGUc--GGUGCGCGGGCc-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.