miRNA display CGI


Results 1 - 20 of 400 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21461 3' -57.3 NC_004812.1 + 120849 0.65 0.868396
Target:  5'- -uACGAcGCcuccccccugCGGGGGCuggcgcuguagcggGGCGggGCGGa -3'
miRNA:   3'- uuUGCU-CGa---------GCCCCCG--------------CCGCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 148212 0.66 0.866166
Target:  5'- ---aGGGCUgCGGGGGggccgcuuggguggcCGGCGGggggAGCAGg -3'
miRNA:   3'- uuugCUCGA-GCCCCC---------------GCCGCU----UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 146634 0.66 0.863163
Target:  5'- gGAugGAGCUgGGGGuuGuGUGGGugGGg -3'
miRNA:   3'- -UUugCUCGAgCCCCcgC-CGCUUugUC- -5'
21461 3' -57.3 NC_004812.1 + 18431 0.66 0.863163
Target:  5'- -cGCGcGCggCGGGGGCcgcguccgguGGCGcgGCGGg -3'
miRNA:   3'- uuUGCuCGa-GCCCCCG----------CCGCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 109828 0.66 0.863163
Target:  5'- -cACcGGCUCGaccGGGGCgagaucuccgcuGGCGAGGCGGc -3'
miRNA:   3'- uuUGcUCGAGC---CCCCG------------CCGCUUUGUC- -5'
21461 3' -57.3 NC_004812.1 + 62110 0.66 0.863163
Target:  5'- cAugGGguuGCUCGGGcGCGGCGGccCGGa -3'
miRNA:   3'- uUugCU---CGAGCCCcCGCCGCUuuGUC- -5'
21461 3' -57.3 NC_004812.1 + 25016 0.66 0.863163
Target:  5'- --uCGGGUggCGGGGGuUGGCGAAgaugggcucGCGGu -3'
miRNA:   3'- uuuGCUCGa-GCCCCC-GCCGCUU---------UGUC- -5'
21461 3' -57.3 NC_004812.1 + 121513 0.66 0.863163
Target:  5'- --cCGGGCgccgCGGGGGCgcccucGGCGuccacguGGCGGg -3'
miRNA:   3'- uuuGCUCGa---GCCCCCG------CCGCu------UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 2319 0.66 0.863163
Target:  5'- aGGACGGGggcaUCGGGGGUcuccGCGGagGACGGg -3'
miRNA:   3'- -UUUGCUCg---AGCCCCCGc---CGCU--UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 77733 0.66 0.863163
Target:  5'- ---gGGGCUCaGGGGGUGGgG--GCGGc -3'
miRNA:   3'- uuugCUCGAG-CCCCCGCCgCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 112470 0.66 0.863163
Target:  5'- --cCGAGUUucucCGGGGGCGGgGGcucGACGc -3'
miRNA:   3'- uuuGCUCGA----GCCCCCGCCgCU---UUGUc -5'
21461 3' -57.3 NC_004812.1 + 152605 0.66 0.863163
Target:  5'- cGGAgGAGg-CGGaGcGGCGGCGAGAgCAGg -3'
miRNA:   3'- -UUUgCUCgaGCC-C-CCGCCGCUUU-GUC- -5'
21461 3' -57.3 NC_004812.1 + 46262 0.66 0.863163
Target:  5'- --uCGAuCUCGGGGcGCGGCaGGAuccgcGCGGg -3'
miRNA:   3'- uuuGCUcGAGCCCC-CGCCG-CUU-----UGUC- -5'
21461 3' -57.3 NC_004812.1 + 33220 0.66 0.863163
Target:  5'- aGGACGGGggcaUCGGGGGUcuccGCGGagGACGGg -3'
miRNA:   3'- -UUUGCUCg---AGCCCCCGc---CGCU--UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 44960 0.66 0.863163
Target:  5'- -cACGAGCgccgaGGGGGCGcGCagGAGGCc- -3'
miRNA:   3'- uuUGCUCGag---CCCCCGC-CG--CUUUGuc -5'
21461 3' -57.3 NC_004812.1 + 152414 0.66 0.863163
Target:  5'- --cCGGGCgccgCGGGGGCgcccucGGCGuccacguGGCGGg -3'
miRNA:   3'- uuuGCUCGa---GCCCCCG------CCGCu------UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 121704 0.66 0.863163
Target:  5'- cGGAgGAGg-CGGaGcGGCGGCGAGAgCAGg -3'
miRNA:   3'- -UUUgCUCgaGCC-C-CCGCCGCUUU-GUC- -5'
21461 3' -57.3 NC_004812.1 + 114282 0.66 0.862408
Target:  5'- -cGCGAGCUucuggagCGGGgucagcgccauGGCGGCGcccagGAACGGa -3'
miRNA:   3'- uuUGCUCGA-------GCCC-----------CCGCCGC-----UUUGUC- -5'
21461 3' -57.3 NC_004812.1 + 50622 0.66 0.862408
Target:  5'- cAGGCGAGCgagaaguUCGGgcuguGGGgGGCGggGCc- -3'
miRNA:   3'- -UUUGCUCG-------AGCC-----CCCgCCGCuuUGuc -5'
21461 3' -57.3 NC_004812.1 + 79402 0.66 0.860128
Target:  5'- cGGCGAGCUCGagagcgaGGccgcguucgagcccGGCGGCGggGaCGGc -3'
miRNA:   3'- uUUGCUCGAGC-------CC--------------CCGCCGCuuU-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.