miRNA display CGI


Results 1 - 20 of 1308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21461 5' -69.2 NC_004812.1 + 110291 0.66 0.399855
Target:  5'- gCCUgagGGUGUgCCUGC-CCgugCCCGCCCCg -3'
miRNA:   3'- -GGG---UCGCGgGGGCGuGG---GGGCGGGGg -5'
21461 5' -69.2 NC_004812.1 + 27161 0.66 0.399855
Target:  5'- gCUGGCGgCCgCGCGCgCCgugCCGCCgCCg -3'
miRNA:   3'- gGGUCGCgGGgGCGUG-GG---GGCGGgGG- -5'
21461 5' -69.2 NC_004812.1 + 15103 0.66 0.399855
Target:  5'- gCCCgAGCGCCUggUGCGCCgguacggcggCGCCCCCg -3'
miRNA:   3'- -GGG-UCGCGGGg-GCGUGGgg--------GCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 107016 0.66 0.399855
Target:  5'- gCCGauGCGCgCCUGCugCgCCagcaGCCCCa -3'
miRNA:   3'- gGGU--CGCGgGGGCGugG-GGg---CGGGGg -5'
21461 5' -69.2 NC_004812.1 + 29316 0.66 0.399855
Target:  5'- -gCAGCGCgCCaCCGUuuuccuggugCCCCGCCgCCa -3'
miRNA:   3'- ggGUCGCG-GG-GGCGug--------GGGGCGGgGG- -5'
21461 5' -69.2 NC_004812.1 + 5630 0.66 0.399855
Target:  5'- aCCGGgGCCgCgGCAuggucucuuccUCCCCGCgUCCg -3'
miRNA:   3'- gGGUCgCGGgGgCGU-----------GGGGGCGgGGG- -5'
21461 5' -69.2 NC_004812.1 + 137471 0.66 0.399855
Target:  5'- uUCGGCGCCgCCUGCuucgcgcgggGCUCCUGgucaaCCCCg -3'
miRNA:   3'- gGGUCGCGG-GGGCG----------UGGGGGCg----GGGG- -5'
21461 5' -69.2 NC_004812.1 + 141956 0.66 0.399855
Target:  5'- gCCCgaaGGCGCCguUCacgaGCA-CCCUGCUCCCg -3'
miRNA:   3'- -GGG---UCGCGG--GGg---CGUgGGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 17075 0.66 0.399855
Target:  5'- ---cGCGCUgCCGCgACCaguCCGCCCaCCg -3'
miRNA:   3'- ggguCGCGGgGGCG-UGGg--GGCGGG-GG- -5'
21461 5' -69.2 NC_004812.1 + 34651 0.66 0.399855
Target:  5'- aCCCGG-GCCaCCgGCGCCagggccagCgCGUCCCCc -3'
miRNA:   3'- -GGGUCgCGG-GGgCGUGG--------GgGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 72490 0.66 0.399855
Target:  5'- -gCGGCGCCUCggggucggggggCGCGCCgCCGCCggggUCCg -3'
miRNA:   3'- ggGUCGCGGGG------------GCGUGGgGGCGG----GGG- -5'
21461 5' -69.2 NC_004812.1 + 61919 0.66 0.399855
Target:  5'- gCCgCAcGCGCCgCCGCGCgggcucgggaUCCCGCgCCg -3'
miRNA:   3'- -GG-GU-CGCGGgGGCGUG----------GGGGCGgGGg -5'
21461 5' -69.2 NC_004812.1 + 70252 0.66 0.399855
Target:  5'- aCCCAGCGCgCaCCGCccgGCUCUCuCCUCUc -3'
miRNA:   3'- -GGGUCGCGgG-GGCG---UGGGGGcGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 137714 0.66 0.399855
Target:  5'- gCCCAgGUGCaguggacgaguUCCCGCagcgcgcggGCUCCCGCCUCg -3'
miRNA:   3'- -GGGU-CGCG-----------GGGGCG---------UGGGGGCGGGGg -5'
21461 5' -69.2 NC_004812.1 + 64018 0.66 0.399855
Target:  5'- aCCAGgGCCgCUuCGCCgCCGCCagCCa -3'
miRNA:   3'- gGGUCgCGGgGGcGUGGgGGCGGg-GG- -5'
21461 5' -69.2 NC_004812.1 + 15407 0.66 0.399855
Target:  5'- gCCGGgGCCgUcgagCGCGCCgCCCcggGCCUCCg -3'
miRNA:   3'- gGGUCgCGGgG----GCGUGG-GGG---CGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 131138 0.66 0.399855
Target:  5'- aCCGGgGCCgCgGCAuggucucuuccUCCCCGCgUCCg -3'
miRNA:   3'- gGGUCgCGGgGgCGU-----------GGGGGCGgGGG- -5'
21461 5' -69.2 NC_004812.1 + 142769 0.66 0.399855
Target:  5'- aCCCGccGgGCgCCCGCugCCCgCGCgcgguCCUCg -3'
miRNA:   3'- -GGGU--CgCGgGGGCGugGGG-GCG-----GGGG- -5'
21461 5' -69.2 NC_004812.1 + 74648 0.66 0.399855
Target:  5'- nCUCGGCGCUCuuG-GCCCCgauggCGCCCUg -3'
miRNA:   3'- -GGGUCGCGGGggCgUGGGG-----GCGGGGg -5'
21461 5' -69.2 NC_004812.1 + 101965 0.66 0.399855
Target:  5'- gUCAGgGgCCgCGgACgCCCGCCgCCCg -3'
miRNA:   3'- gGGUCgCgGGgGCgUGgGGGCGG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.