miRNA display CGI


Results 1 - 20 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21476 3' -60.8 NC_004812.1 + 93773 0.66 0.770781
Target:  5'- aCCaCGUCCaccucgaaguggUCGGCGGAGAugcugcggaggagccCCCCGGGg -3'
miRNA:   3'- gGGcGCAGG------------GGCCGUCUUU---------------GGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 24265 0.66 0.770781
Target:  5'- uCCCGCGuucuuucucUCCCCGGCcgcuguuGAguuuccgucccgcccAACCCCa-- -3'
miRNA:   3'- -GGGCGC---------AGGGGCCGu------CU---------------UUGGGGcuc -5'
21476 3' -60.8 NC_004812.1 + 81933 0.66 0.767194
Target:  5'- aCCCGCGgCuCCCGGCcaaguaccaGGgcGCCaUCGGGg -3'
miRNA:   3'- -GGGCGCaG-GGGCCG---------UCuuUGG-GGCUC- -5'
21476 3' -60.8 NC_004812.1 + 50926 0.66 0.767194
Target:  5'- aCCCGCcuucggggCCCCGGCGuacgcGCCCCa-- -3'
miRNA:   3'- -GGGCGca------GGGGCCGUcuu--UGGGGcuc -5'
21476 3' -60.8 NC_004812.1 + 126922 0.66 0.767194
Target:  5'- uCgUGCGUCCCUGGCGGuu-UCUCGcGg -3'
miRNA:   3'- -GgGCGCAGGGGCCGUCuuuGGGGCuC- -5'
21476 3' -60.8 NC_004812.1 + 117801 0.66 0.767194
Target:  5'- gCCGCaGcCCCCGacaccuGCGGGcGACCCuCGAGa -3'
miRNA:   3'- gGGCG-CaGGGGC------CGUCU-UUGGG-GCUC- -5'
21476 3' -60.8 NC_004812.1 + 93253 0.66 0.767194
Target:  5'- aUCCGCGacaaacgCCUCGggcaggucGCAGGAACCCagCGAGa -3'
miRNA:   3'- -GGGCGCa------GGGGC--------CGUCUUUGGG--GCUC- -5'
21476 3' -60.8 NC_004812.1 + 26068 0.66 0.767194
Target:  5'- uCgCGCGcCCCCGGCccGGGgucgucGGCCUCGGa -3'
miRNA:   3'- -GgGCGCaGGGGCCG--UCU------UUGGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 119808 0.66 0.767194
Target:  5'- gCCUGCcg-CCCGGCGGc--CCCUGAGc -3'
miRNA:   3'- -GGGCGcagGGGCCGUCuuuGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 77607 0.66 0.767194
Target:  5'- --gGCGUCCCCGGCcAGcagcGCCuuGGc -3'
miRNA:   3'- gggCGCAGGGGCCG-UCuu--UGGggCUc -5'
21476 3' -60.8 NC_004812.1 + 85737 0.66 0.767194
Target:  5'- cCCCGCcccCCCCGcGCAGccacGCCCCc-- -3'
miRNA:   3'- -GGGCGca-GGGGC-CGUCuu--UGGGGcuc -5'
21476 3' -60.8 NC_004812.1 + 27600 0.66 0.767194
Target:  5'- gCCGUaGcCCCCGGacccgccGAAGCUCCGGGc -3'
miRNA:   3'- gGGCG-CaGGGGCCgu-----CUUUGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 139845 0.66 0.767194
Target:  5'- cCCaCGCGUCUUCGggcccGCGGc--CCCCGGGg -3'
miRNA:   3'- -GG-GCGCAGGGGC-----CGUCuuuGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 22695 0.66 0.767194
Target:  5'- cCCCGCGUCCCCccc----GCCCgGGGu -3'
miRNA:   3'- -GGGCGCAGGGGccgucuuUGGGgCUC- -5'
21476 3' -60.8 NC_004812.1 + 112662 0.66 0.767194
Target:  5'- aCCUGCGggacgCCCUGGacCGGAgcGACCaCCGGa -3'
miRNA:   3'- -GGGCGCa----GGGGCC--GUCU--UUGG-GGCUc -5'
21476 3' -60.8 NC_004812.1 + 150709 0.66 0.767194
Target:  5'- gCCUGCcg-CCCGGCGGc--CCCUGAGc -3'
miRNA:   3'- -GGGCGcagGGGCCGUCuuuGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 128824 0.66 0.767194
Target:  5'- cCCCGCccucucCCCCGGCGGGcugGGCCgCCc-- -3'
miRNA:   3'- -GGGCGca----GGGGCCGUCU---UUGG-GGcuc -5'
21476 3' -60.8 NC_004812.1 + 58542 0.66 0.767194
Target:  5'- gCCCGgGgcccggCUCCGGCcGc--CCCCGAGc -3'
miRNA:   3'- -GGGCgCa-----GGGGCCGuCuuuGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 126311 0.66 0.767194
Target:  5'- gCCCGCGgaggUCCC--CAGGGACCCCu-- -3'
miRNA:   3'- -GGGCGCa---GGGGccGUCUUUGGGGcuc -5'
21476 3' -60.8 NC_004812.1 + 99954 0.66 0.767194
Target:  5'- gCCCGCGUCgugCCGGUGGGccGugCCggCGGGg -3'
miRNA:   3'- -GGGCGCAGg--GGCCGUCU--UugGG--GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.