miRNA display CGI


Results 1 - 20 of 855 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21478 5' -63.5 NC_004812.1 + 1656 0.65 0.634251
Target:  5'- cGCCgcucccccguuGGCcGCGGCGCcgCGGccCGCCc -3'
miRNA:   3'- cCGGau---------CCGcCGCCGCGa-GCCa-GCGG- -5'
21478 5' -63.5 NC_004812.1 + 32557 0.65 0.634251
Target:  5'- cGCCgcucccccguuGGCcGCGGCGCcgCGGccCGCCc -3'
miRNA:   3'- cCGGau---------CCGcCGCCGCGa-GCCa-GCGG- -5'
21478 5' -63.5 NC_004812.1 + 44162 0.65 0.633287
Target:  5'- cGGCgUAGaggguaucgaggguGUGcGCGGCGCUgGGggccacCGCCu -3'
miRNA:   3'- -CCGgAUC--------------CGC-CGCCGCGAgCCa-----GCGG- -5'
21478 5' -63.5 NC_004812.1 + 106732 0.65 0.633287
Target:  5'- gGGCgaGGGCgacgaGGCcuacuacgucauggGGCGCUC-GUCGCUg -3'
miRNA:   3'- -CCGgaUCCG-----CCG--------------CCGCGAGcCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 28105 0.65 0.632324
Target:  5'- cGCCUGGGCcggcaacuggaccGGCccgcccgacgucucGGCGCUgGG-CGCg -3'
miRNA:   3'- cCGGAUCCG-------------CCG--------------CCGCGAgCCaGCGg -5'
21478 5' -63.5 NC_004812.1 + 153614 0.65 0.632324
Target:  5'- cGCCUGGGCcggcaacuggaccGGCccgcccgacgucucGGCGCUgGG-CGCg -3'
miRNA:   3'- cCGGAUCCG-------------CCG--------------CCGCGAgCCaGCGg -5'
21478 5' -63.5 NC_004812.1 + 44783 0.66 0.630396
Target:  5'- gGGUCUcGGCGGCGGgGaCgaccaacaccuccgCGGgggCGCUg -3'
miRNA:   3'- -CCGGAuCCGCCGCCgC-Ga-------------GCCa--GCGG- -5'
21478 5' -63.5 NC_004812.1 + 124058 0.66 0.626542
Target:  5'- cGGCCaacGGGgGaGCGGCGCgucaUCGaucCGCCu -3'
miRNA:   3'- -CCGGa--UCCgC-CGCCGCG----AGCca-GCGG- -5'
21478 5' -63.5 NC_004812.1 + 143678 0.66 0.626542
Target:  5'- aGGCCccGGCGaucGUcGCGCUCGaGcgcUCGCCg -3'
miRNA:   3'- -CCGGauCCGC---CGcCGCGAGC-C---AGCGG- -5'
21478 5' -63.5 NC_004812.1 + 45097 0.66 0.626542
Target:  5'- cGGCCggcGGGCgGGgGGCGUgagUCGGg-GCg -3'
miRNA:   3'- -CCGGa--UCCG-CCgCCGCG---AGCCagCGg -5'
21478 5' -63.5 NC_004812.1 + 97949 0.66 0.626542
Target:  5'- cGCCUGGcCGGUGGgGUccaGGgCGCCg -3'
miRNA:   3'- cCGGAUCcGCCGCCgCGag-CCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 9756 0.66 0.626542
Target:  5'- cGCCaccAGGCccGCGGCGCgccggCGGcCGCg -3'
miRNA:   3'- cCGGa--UCCGc-CGCCGCGa----GCCaGCGg -5'
21478 5' -63.5 NC_004812.1 + 109168 0.66 0.626542
Target:  5'- gGGCCUGGGgcgggaGGCGGUGgagaGGUUcuucaGCCa -3'
miRNA:   3'- -CCGGAUCCg-----CCGCCGCgag-CCAG-----CGG- -5'
21478 5' -63.5 NC_004812.1 + 60075 0.66 0.626542
Target:  5'- cGCCgaccAGGcCGGCGGCccGCgccaGGUaggCGCCg -3'
miRNA:   3'- cCGGa---UCC-GCCGCCG--CGag--CCA---GCGG- -5'
21478 5' -63.5 NC_004812.1 + 95433 0.66 0.626542
Target:  5'- uGGCC-GGGUGGC-GCGCcgCGGguucggGCCu -3'
miRNA:   3'- -CCGGaUCCGCCGcCGCGa-GCCag----CGG- -5'
21478 5' -63.5 NC_004812.1 + 130214 0.66 0.626542
Target:  5'- aGCCccGGGCGGCuGuCGCccaGGcCGCCg -3'
miRNA:   3'- cCGGa-UCCGCCGcC-GCGag-CCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 152663 0.66 0.626542
Target:  5'- uGCCcGGGCuGGCGGCcGCgcgCGccgUGCCg -3'
miRNA:   3'- cCGGaUCCG-CCGCCG-CGa--GCca-GCGG- -5'
21478 5' -63.5 NC_004812.1 + 105504 0.66 0.626542
Target:  5'- gGGCCc-GGCGGCcgagugGGUGUgCGGcCGUCa -3'
miRNA:   3'- -CCGGauCCGCCG------CCGCGaGCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 100781 0.66 0.626542
Target:  5'- cGCCgaucgugcGGUGGCGGC-CUCGG--GCCc -3'
miRNA:   3'- cCGGau------CCGCCGCCGcGAGCCagCGG- -5'
21478 5' -63.5 NC_004812.1 + 6908 0.66 0.626542
Target:  5'- uGGUCUcgGGGCGcGCuGCGCccgCGGg-GCCg -3'
miRNA:   3'- -CCGGA--UCCGC-CGcCGCGa--GCCagCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.