miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21479 3' -65 NC_004812.1 + 142523 0.66 0.563426
Target:  5'- cGC-CCCCGGUucccgauGGgGCGGCUgcUGGGGUUu -3'
miRNA:   3'- -CGaGGGGCCG-------CUgCGCCGG--GCUCCAG- -5'
21479 3' -65 NC_004812.1 + 155992 0.66 0.563426
Target:  5'- uGCagCCCGcgugcucGCGGCGCGggggaggggacGCCCGGGGcCg -3'
miRNA:   3'- -CGagGGGC-------CGCUGCGC-----------CGGGCUCCaG- -5'
21479 3' -65 NC_004812.1 + 30484 0.66 0.563426
Target:  5'- uGCagCCCGcgugcucGCGGCGCGggggaggggacGCCCGGGGcCg -3'
miRNA:   3'- -CGagGGGC-------CGCUGCGC-----------CGGGCUCCaG- -5'
21479 3' -65 NC_004812.1 + 29769 0.66 0.561548
Target:  5'- cGC-CaaaCCGgggaggggcggggcGCGGCGgGGCCCgGGGGUCg -3'
miRNA:   3'- -CGaGg--GGC--------------CGCUGCgCCGGG-CUCCAG- -5'
21479 3' -65 NC_004812.1 + 155277 0.66 0.561548
Target:  5'- cGC-CaaaCCGgggaggggcggggcGCGGCGgGGCCCgGGGGUCg -3'
miRNA:   3'- -CGaGg--GGC--------------CGCUGCgCCGGG-CUCCAG- -5'
21479 3' -65 NC_004812.1 + 99386 0.66 0.554988
Target:  5'- aGCgCCgugUCGGCGcUGCGGCggCUGGGGUCg -3'
miRNA:   3'- -CGaGG---GGCCGCuGCGCCG--GGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 55923 0.66 0.554988
Target:  5'- uGgUCCuCUGGCGAgGUGGCCuggcccccgaCGAGGa- -3'
miRNA:   3'- -CgAGG-GGCCGCUgCGCCGG----------GCUCCag -5'
21479 3' -65 NC_004812.1 + 93578 0.66 0.554988
Target:  5'- cCUCCCCGGgGgccaaGCGCGcGCUCGcGGa- -3'
miRNA:   3'- cGAGGGGCCgC-----UGCGC-CGGGCuCCag -5'
21479 3' -65 NC_004812.1 + 126272 0.66 0.554988
Target:  5'- cGCcUCCCGGCGcCGCGGgCCCcuucuGGGcCu -3'
miRNA:   3'- -CGaGGGGCCGCuGCGCC-GGGc----UCCaG- -5'
21479 3' -65 NC_004812.1 + 57795 0.66 0.554988
Target:  5'- gGCggCgCUGGCGACGgagcucuucCGGaCCGGGGUCc -3'
miRNA:   3'- -CGa-GgGGCCGCUGC---------GCCgGGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 70972 0.66 0.554988
Target:  5'- cCUgCCCGGgagagcacCG-CGgGGCCCGcGGGUCg -3'
miRNA:   3'- cGAgGGGCC--------GCuGCgCCGGGC-UCCAG- -5'
21479 3' -65 NC_004812.1 + 28454 0.66 0.554988
Target:  5'- cGCagCgCCGcGCGACcCGGUCCGcGGUCc -3'
miRNA:   3'- -CGa-GgGGC-CGCUGcGCCGGGCuCCAG- -5'
21479 3' -65 NC_004812.1 + 50939 0.66 0.554988
Target:  5'- --gCCCCGGCGuACGCGcCCCaccaccacgccGGGGUg -3'
miRNA:   3'- cgaGGGGCCGC-UGCGCcGGG-----------CUCCAg -5'
21479 3' -65 NC_004812.1 + 19872 0.66 0.554988
Target:  5'- -gUCCCgGGCGuCGUGGgCgCGGGGg- -3'
miRNA:   3'- cgAGGGgCCGCuGCGCCgG-GCUCCag -5'
21479 3' -65 NC_004812.1 + 122412 0.66 0.554988
Target:  5'- cCUCCUCGGgugGACGCgcggugGGCCCGGGcggcGUCu -3'
miRNA:   3'- cGAGGGGCCg--CUGCG------CCGGGCUC----CAG- -5'
21479 3' -65 NC_004812.1 + 764 0.66 0.554988
Target:  5'- cGCcUCCCGGCGcCGCGGgCCCcuucuGGGcCu -3'
miRNA:   3'- -CGaGGGGCCGCuGCGCC-GGGc----UCCaG- -5'
21479 3' -65 NC_004812.1 + 122352 0.66 0.554988
Target:  5'- gGgUUCCCGGCGGgggcCGgGGCgCGGGG-Cg -3'
miRNA:   3'- -CgAGGGGCCGCU----GCgCCGgGCUCCaG- -5'
21479 3' -65 NC_004812.1 + 118785 0.66 0.554988
Target:  5'- --aCCUCGGCGGCGagaucCCCGAGGa- -3'
miRNA:   3'- cgaGGGGCCGCUGCgcc--GGGCUCCag -5'
21479 3' -65 NC_004812.1 + 71989 0.66 0.554988
Target:  5'- cGCgCCCCGGgGcugggGCGCGGUcgucUCGcGGUCg -3'
miRNA:   3'- -CGaGGGGCCgC-----UGCGCCG----GGCuCCAG- -5'
21479 3' -65 NC_004812.1 + 136701 0.66 0.554988
Target:  5'- cGCgguggCGGCGGCGCGGgCCGccGGUCc -3'
miRNA:   3'- -CGaggg-GCCGCUGCGCCgGGCu-CCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.