Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21479 | 5' | -57.8 | NC_004812.1 | + | 156227 | 0.66 | 0.862432 |
Target: 5'- gGGGcgGggcgccgCGGGAUgCGCCGGCg---- -3' miRNA: 3'- -CCCuaCa------GCCCUGaGCGGCCGgauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 25354 | 0.66 | 0.862432 |
Target: 5'- uGGGcgG-CGaccacGGGCUCGCCGGCg---- -3' miRNA: 3'- -CCCuaCaGC-----CCUGAGCGGCCGgauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 125326 | 0.66 | 0.862432 |
Target: 5'- gGGGcgGggcgccgCGGGAUgCGCCGGCg---- -3' miRNA: 3'- -CCCuaCa------GCCCUGaGCGGCCGgauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 96030 | 0.66 | 0.861683 |
Target: 5'- cGGGAccUGgacgCGGGugcgcauGCUcCGCCGGCCc--- -3' miRNA: 3'- -CCCU--ACa---GCCC-------UGA-GCGGCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 135133 | 0.66 | 0.855621 |
Target: 5'- uGGGGUGuUUGGGGaggacgaaugagaugUCGCgGGCCUGc- -3' miRNA: 3'- -CCCUAC-AGCCCUg--------------AGCGgCCGGAUau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 44196 | 0.66 | 0.854854 |
Target: 5'- cGGGGg--UGGGGCUCGgCGGCg---- -3' miRNA: 3'- -CCCUacaGCCCUGAGCgGCCGgauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 77722 | 0.66 | 0.854854 |
Target: 5'- cGGAUGgccUCGGGGCUCagggggugggGgCGGCCUc-- -3' miRNA: 3'- cCCUAC---AGCCCUGAG----------CgGCCGGAuau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 101869 | 0.66 | 0.847081 |
Target: 5'- gGGGAUG-CGGccccgCGCCGGCCc--- -3' miRNA: 3'- -CCCUACaGCCcuga-GCGGCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 82803 | 0.66 | 0.847081 |
Target: 5'- uGGGGUGggagcgCGGGGCgccggCGCCcGCCc--- -3' miRNA: 3'- -CCCUACa-----GCCCUGa----GCGGcCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 43535 | 0.66 | 0.830974 |
Target: 5'- cGGcGGUGUCGcGGCUCGCugccgccgCGGCCg--- -3' miRNA: 3'- -CC-CUACAGCcCUGAGCG--------GCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 17539 | 0.66 | 0.830974 |
Target: 5'- aGGGGcgacgGUCGGGGCggaCGCUGGgCUc-- -3' miRNA: 3'- -CCCUa----CAGCCCUGa--GCGGCCgGAuau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 5245 | 0.66 | 0.830974 |
Target: 5'- cGGccGUCGGGGCgcgccgaGUCGGCCg--- -3' miRNA: 3'- cCCuaCAGCCCUGag-----CGGCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 130753 | 0.66 | 0.830974 |
Target: 5'- cGGccGUCGGGGCgCGCCgagucGGCCg--- -3' miRNA: 3'- cCCuaCAGCCCUGaGCGG-----CCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 23239 | 0.66 | 0.822654 |
Target: 5'- gGGGGUGcugagCGGGACcuaccugCGCCagguccacGGCCUGa- -3' miRNA: 3'- -CCCUACa----GCCCUGa------GCGG--------CCGGAUau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 57496 | 0.66 | 0.822653 |
Target: 5'- ---cUG-CGGGucCUgGCCGGCCUGUGg -3' miRNA: 3'- cccuACaGCCCu-GAgCGGCCGGAUAU- -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 116503 | 0.67 | 0.814165 |
Target: 5'- cGGGG-GUCGcGGACggacgcgCGCCcGGCCg--- -3' miRNA: 3'- -CCCUaCAGC-CCUGa------GCGG-CCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 68101 | 0.67 | 0.813308 |
Target: 5'- cGGGcgGUCGaGGGCgaacgucUCGgCGGCCg--- -3' miRNA: 3'- -CCCuaCAGC-CCUG-------AGCgGCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 127649 | 0.67 | 0.810725 |
Target: 5'- gGGGAggccccgcgggCGGGGCUCGCggcggCGGCCa--- -3' miRNA: 3'- -CCCUaca--------GCCCUGAGCG-----GCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 2140 | 0.67 | 0.810724 |
Target: 5'- gGGGAggccccgcgggCGGGGCUCGCggcggCGGCCa--- -3' miRNA: 3'- -CCCUaca--------GCCCUGAGCG-----GCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 83486 | 0.67 | 0.805517 |
Target: 5'- cGGGGUcGUCGGGGagcgCGaCGGCCa--- -3' miRNA: 3'- -CCCUA-CAGCCCUga--GCgGCCGGauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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