miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21482 3' -56.2 NC_004812.1 + 145029 0.66 0.921157
Target:  5'- gGCGucCCUCCCCc--CCGGUG--CCCCa -3'
miRNA:   3'- gUGU--GGAGGGGaaaGGUCGCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 18849 0.66 0.921157
Target:  5'- uCGCGCg-CCUCggcCCAGCGggUCCCg -3'
miRNA:   3'- -GUGUGgaGGGGaaaGGUCGCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 33081 0.66 0.921157
Target:  5'- cCGCccucuCCUCCCCgccgcgcucCCGGCGcccgaCCCCa -3'
miRNA:   3'- -GUGu----GGAGGGGaaa------GGUCGCaa---GGGG- -5'
21482 3' -56.2 NC_004812.1 + 144443 0.66 0.921157
Target:  5'- cCGCGCCguucuggggCCCCga--CGGCGcgccgCCCCa -3'
miRNA:   3'- -GUGUGGa--------GGGGaaagGUCGCaa---GGGG- -5'
21482 3' -56.2 NC_004812.1 + 75980 0.66 0.921157
Target:  5'- gACuCCccgCCCCUcUCCAccGCGgaCCCCc -3'
miRNA:   3'- gUGuGGa--GGGGAaAGGU--CGCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 65415 0.66 0.919486
Target:  5'- cCGCGCC-CCCCgcccccgagCCcGCGUcccucggggaggggUCCCCc -3'
miRNA:   3'- -GUGUGGaGGGGaaa------GGuCGCA--------------AGGGG- -5'
21482 3' -56.2 NC_004812.1 + 73422 0.66 0.915504
Target:  5'- cCGCGCCUCCCg---CC-GCGagCUCCg -3'
miRNA:   3'- -GUGUGGAGGGgaaaGGuCGCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 28127 0.66 0.915504
Target:  5'- aGCugCUCCuCCUgaUCGGCGagacggUCCUCg -3'
miRNA:   3'- gUGugGAGG-GGAaaGGUCGCa-----AGGGG- -5'
21482 3' -56.2 NC_004812.1 + 282 0.66 0.915504
Target:  5'- gCGCGCgCUCCgCCgccgUCCGGcCGcgCCCg -3'
miRNA:   3'- -GUGUG-GAGG-GGaa--AGGUC-GCaaGGGg -5'
21482 3' -56.2 NC_004812.1 + 71476 0.66 0.915504
Target:  5'- gGCGCgC-CCCCg--CCcGCGcgCCCCg -3'
miRNA:   3'- gUGUG-GaGGGGaaaGGuCGCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 55740 0.66 0.915504
Target:  5'- gGCGcCCUCCCCcgccUCCcccGCGg-CCCCg -3'
miRNA:   3'- gUGU-GGAGGGGaa--AGGu--CGCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 31183 0.66 0.915504
Target:  5'- gCGCGCgCUCCgCCgccgUCCGGcCGcgCCCg -3'
miRNA:   3'- -GUGUG-GAGG-GGaa--AGGUC-GCaaGGGg -5'
21482 3' -56.2 NC_004812.1 + 132538 0.66 0.914926
Target:  5'- gCACAUUUCCCCcggggacgcgaggggCGGCGUcCCCCg -3'
miRNA:   3'- -GUGUGGAGGGGaaag-----------GUCGCAaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 7029 0.66 0.914926
Target:  5'- gCACAUUUCCCCcggggacgcgaggggCGGCGUcCCCCg -3'
miRNA:   3'- -GUGUGGAGGGGaaag-----------GUCGCAaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 21858 0.66 0.913763
Target:  5'- aCACACguugUUCCCCgcggccaggcgcgccUCCAGC--UCCCCg -3'
miRNA:   3'- -GUGUG----GAGGGGaa-------------AGGUCGcaAGGGG- -5'
21482 3' -56.2 NC_004812.1 + 77654 0.66 0.909617
Target:  5'- gCGCACC-CCCgacccCCGGCGcaCCCCc -3'
miRNA:   3'- -GUGUGGaGGGgaaa-GGUCGCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 136119 0.66 0.909617
Target:  5'- cCACACCUUCCCgggggUCgGGCGcgugaagaaCCUCa -3'
miRNA:   3'- -GUGUGGAGGGGaa---AGgUCGCaa-------GGGG- -5'
21482 3' -56.2 NC_004812.1 + 132062 0.66 0.909617
Target:  5'- cUACAUCUCCCCggagcugCgGGUGgugacgcagCCCCg -3'
miRNA:   3'- -GUGUGGAGGGGaaa----GgUCGCaa-------GGGG- -5'
21482 3' -56.2 NC_004812.1 + 82610 0.66 0.909617
Target:  5'- uGCACCgUCCCCcUcaucacgcagcUCCAGCuggCCCUg -3'
miRNA:   3'- gUGUGG-AGGGGaA-----------AGGUCGcaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 77618 0.66 0.909617
Target:  5'- gCGCACC-CCCgacccCCGGCGcaCCCCc -3'
miRNA:   3'- -GUGUGGaGGGgaaa-GGUCGCaaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.