miRNA display CGI


Results 1 - 20 of 238 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21482 5' -52.8 NC_004812.1 + 75125 0.66 0.976387
Target:  5'- cGAGAGCGAcggggggcgcguguaCGCCGuCGucGGGGAGGCc -3'
miRNA:   3'- -UUCUUGCU---------------GCGGUuGUcuCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 134775 0.66 0.975354
Target:  5'- cGAGGgcGCGACGCCcucggguuCGGAGGAuccGAuGACg -3'
miRNA:   3'- -UUCU--UGCUGCGGuu------GUCUCCU---CU-CUG- -5'
21482 5' -52.8 NC_004812.1 + 136092 0.66 0.975354
Target:  5'- -cGAGCGcACGaCGACGGGGGugcccAGGGGCu -3'
miRNA:   3'- uuCUUGC-UGCgGUUGUCUCC-----UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 9256 0.66 0.975354
Target:  5'- gAAGGGCGACGCCccuccuucuCGGcGGAcGGGCa -3'
miRNA:   3'- -UUCUUGCUGCGGuu-------GUCuCCUcUCUG- -5'
21482 5' -52.8 NC_004812.1 + 25570 0.66 0.975354
Target:  5'- --cGACGACGaCGACGG-GGAG-GACg -3'
miRNA:   3'- uucUUGCUGCgGUUGUCuCCUCuCUG- -5'
21482 5' -52.8 NC_004812.1 + 113514 0.66 0.975354
Target:  5'- gGAGGcCGugGCCu-CGGcGGAcGAGACg -3'
miRNA:   3'- -UUCUuGCugCGGuuGUCuCCU-CUCUG- -5'
21482 5' -52.8 NC_004812.1 + 122545 0.66 0.975354
Target:  5'- cGGGGGCGggggGCGCgGggggggGCGGAGGGGAGcGCg -3'
miRNA:   3'- -UUCUUGC----UGCGgU------UGUCUCCUCUC-UG- -5'
21482 5' -52.8 NC_004812.1 + 20841 0.66 0.975354
Target:  5'- -uGAcCGACGCgugGGCGGAGG-GGGGCu -3'
miRNA:   3'- uuCUuGCUGCGg--UUGUCUCCuCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 110644 0.66 0.975354
Target:  5'- cGGGGCggaGACGCgGGCGG-GGAGGGGu -3'
miRNA:   3'- uUCUUG---CUGCGgUUGUCuCCUCUCUg -5'
21482 5' -52.8 NC_004812.1 + 151078 0.66 0.975354
Target:  5'- --cGACGACGaCGACGG-GGAG-GACg -3'
miRNA:   3'- uucUUGCUGCgGUUGUCuCCUCuCUG- -5'
21482 5' -52.8 NC_004812.1 + 153446 0.66 0.975354
Target:  5'- cGGGGGCGggggGCGCgGggggggGCGGAGGGGAGcGCg -3'
miRNA:   3'- -UUCUUGC----UGCGgU------UGUCUCCUCUC-UG- -5'
21482 5' -52.8 NC_004812.1 + 138793 0.66 0.973744
Target:  5'- uGGGuCGugGCCGcgaacccccucuuugACGGGccGGAGGGACg -3'
miRNA:   3'- uUCUuGCugCGGU---------------UGUCU--CCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 42384 0.66 0.972911
Target:  5'- -cGAcCGGCGCCGGCGuuuugugggcaucguGGGAGGGGCc -3'
miRNA:   3'- uuCUuGCUGCGGUUGUc--------------UCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 39529 0.66 0.972629
Target:  5'- --aAugGACGCgAgggGCGGGGGAGcGGGCg -3'
miRNA:   3'- uucUugCUGCGgU---UGUCUCCUC-UCUG- -5'
21482 5' -52.8 NC_004812.1 + 113244 0.66 0.972629
Target:  5'- -cGGugGGcCGCUcGCGGGGGGGguGGACg -3'
miRNA:   3'- uuCUugCU-GCGGuUGUCUCCUC--UCUG- -5'
21482 5' -52.8 NC_004812.1 + 36951 0.66 0.972629
Target:  5'- uAGGGCGGCGaggggaaggCGGCGGAGGcgaagGGGGGCg -3'
miRNA:   3'- uUCUUGCUGCg--------GUUGUCUCC-----UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 45122 0.66 0.972629
Target:  5'- cGGGGCGAUGUCccCAGAGGGGuccacgggGGGCc -3'
miRNA:   3'- uUCUUGCUGCGGuuGUCUCCUC--------UCUG- -5'
21482 5' -52.8 NC_004812.1 + 146789 0.66 0.972629
Target:  5'- -uGAACGGCcgaacacaGUCGAaggGGGGGAGGGACc -3'
miRNA:   3'- uuCUUGCUG--------CGGUUg--UCUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 8628 0.66 0.972629
Target:  5'- --aAugGACGCgAgggGCGGGGGAGcGGGCg -3'
miRNA:   3'- uucUugCUGCGgU---UGUCUCCUC-UCUG- -5'
21482 5' -52.8 NC_004812.1 + 155552 0.66 0.972629
Target:  5'- cGGGAGgGGCGgggGAgGGGGGAGGGGCg -3'
miRNA:   3'- -UUCUUgCUGCgg-UUgUCUCCUCUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.