miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21483 3' -60.1 NC_004812.1 + 23559 0.66 0.775286
Target:  5'- cCGCgcccGCCcccgaguggGCgGGAGGGgcggcgcgccGCGGGGCGGGg -3'
miRNA:   3'- aGCGa---CGG---------CG-CCUCCU----------UGCCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 98696 0.66 0.775286
Target:  5'- gUCGaaccGCCGCgccGGGGGcGGCGGcGCGGGg -3'
miRNA:   3'- -AGCga--CGGCG---CCUCC-UUGCCuCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 143147 0.66 0.775286
Target:  5'- gCGCUGaCCGUGGAgaaguGGAucGCGGccaacgccgGGCGAa -3'
miRNA:   3'- aGCGAC-GGCGCCU-----CCU--UGCC---------UCGCUc -5'
21483 3' -60.1 NC_004812.1 + 72228 0.66 0.775286
Target:  5'- cUCGCgGaCUGCGGcGGGGcguccggucgGCGGGcGCGAGa -3'
miRNA:   3'- -AGCGaC-GGCGCC-UCCU----------UGCCU-CGCUC- -5'
21483 3' -60.1 NC_004812.1 + 118310 0.66 0.775286
Target:  5'- cCGCUggGUgGCGGAGGGGCagaugacgccGGAGCa-- -3'
miRNA:   3'- aGCGA--CGgCGCCUCCUUG----------CCUCGcuc -5'
21483 3' -60.1 NC_004812.1 + 135826 0.66 0.775286
Target:  5'- gCGC-GCCGCaGGugcuccAGGAACGGAacGCaGAGg -3'
miRNA:   3'- aGCGaCGGCG-CC------UCCUUGCCU--CG-CUC- -5'
21483 3' -60.1 NC_004812.1 + 82981 0.66 0.775286
Target:  5'- aCGCUccCCGCGGcguGGGAGacgggcgcCGGGGCGAu -3'
miRNA:   3'- aGCGAc-GGCGCC---UCCUU--------GCCUCGCUc -5'
21483 3' -60.1 NC_004812.1 + 46587 0.66 0.775286
Target:  5'- gCGCgGCCG-GGuagcacAGGAGCGGcGCGAc -3'
miRNA:   3'- aGCGaCGGCgCC------UCCUUGCCuCGCUc -5'
21483 3' -60.1 NC_004812.1 + 48601 0.66 0.775286
Target:  5'- aCGCgGCCGCGGccauccGGAcgacGCGcGuGCGGGa -3'
miRNA:   3'- aGCGaCGGCGCCu-----CCU----UGC-CuCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 76526 0.66 0.775286
Target:  5'- -gGCUGCCugGUcGAGG-GCGGGGCGuGg -3'
miRNA:   3'- agCGACGG--CGcCUCCuUGCCUCGCuC- -5'
21483 3' -60.1 NC_004812.1 + 16498 0.66 0.775286
Target:  5'- cCGCcaccgGCCG-GGGGGcGCGgGGGCGAu -3'
miRNA:   3'- aGCGa----CGGCgCCUCCuUGC-CUCGCUc -5'
21483 3' -60.1 NC_004812.1 + 149067 0.66 0.775286
Target:  5'- cCGCgcccGCCcccgaguggGCgGGAGGGgcggcgcgccGCGGGGCGGGg -3'
miRNA:   3'- aGCGa---CGG---------CG-CCUCCU----------UGCCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 93536 0.66 0.775286
Target:  5'- -aGCgGCCGgaGGGGGccGugGGGGCGGa -3'
miRNA:   3'- agCGaCGGCg-CCUCC--UugCCUCGCUc -5'
21483 3' -60.1 NC_004812.1 + 100031 0.66 0.775286
Target:  5'- gUCGCUGCaugGCGGccGcGCGuccGAGCGGGg -3'
miRNA:   3'- -AGCGACGg--CGCCucCuUGC---CUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 56909 0.66 0.775286
Target:  5'- cCGCgGCCGCGaccGAGucccuGGCGGAGgCGGGg -3'
miRNA:   3'- aGCGaCGGCGC---CUCc----UUGCCUC-GCUC- -5'
21483 3' -60.1 NC_004812.1 + 27787 0.66 0.772572
Target:  5'- -aGCccGCCGgGGgagagggcggggccGGGGGgGGAGCGGGg -3'
miRNA:   3'- agCGa-CGGCgCC--------------UCCUUgCCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 38606 0.66 0.766199
Target:  5'- gUCGCgccgaguccGCgGCGGGGGucuccGCGccGGGCGAGg -3'
miRNA:   3'- -AGCGa--------CGgCGCCUCCu----UGC--CUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 78544 0.66 0.766199
Target:  5'- -gGCUGCCGCaaGGGGGcucCGGgggcuGGCGAu -3'
miRNA:   3'- agCGACGGCG--CCUCCuu-GCC-----UCGCUc -5'
21483 3' -60.1 NC_004812.1 + 5538 0.66 0.766199
Target:  5'- -gGCggGCCGgGGgccccccagAGGGGCGGAG-GAGg -3'
miRNA:   3'- agCGa-CGGCgCC---------UCCUUGCCUCgCUC- -5'
21483 3' -60.1 NC_004812.1 + 7705 0.66 0.766199
Target:  5'- gUCGCgccgaguccGCgGCGGGGGucuccGCGccGGGCGAGg -3'
miRNA:   3'- -AGCGa--------CGgCGCCUCCu----UGC--CUCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.