miRNA display CGI


Results 1 - 20 of 273 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21483 5' -56.7 NC_004812.1 + 41220 0.66 0.881666
Target:  5'- cGGCGAcuacgcGCUGCGGUCGCcgccuucgucugucgGCGC-CGCGu -3'
miRNA:   3'- -CUGCU------UGGCGUCAGCG---------------CGUGuGCGUu -5'
21483 5' -56.7 NC_004812.1 + 69657 0.66 0.878824
Target:  5'- cGGCGAAgguCUGCGGUUugGCGCGC-CGCu- -3'
miRNA:   3'- -CUGCUU---GGCGUCAG--CGCGUGuGCGuu -5'
21483 5' -56.7 NC_004812.1 + 107873 0.66 0.878824
Target:  5'- --gGAGCCggggggGCGGUCGUccuccgggccGCACGCGCGGu -3'
miRNA:   3'- cugCUUGG------CGUCAGCG----------CGUGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 73905 0.66 0.878824
Target:  5'- gGGCGAGCCGCcGUCG-GCcgGCGCc- -3'
miRNA:   3'- -CUGCUUGGCGuCAGCgCGugUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 131257 0.66 0.878824
Target:  5'- cGGCGAGcCCGUGGUCGCcGCcCAcCGCc- -3'
miRNA:   3'- -CUGCUU-GGCGUCAGCG-CGuGU-GCGuu -5'
21483 5' -56.7 NC_004812.1 + 121846 0.66 0.878824
Target:  5'- uGCGGGCCGCGGcggcCGCGgcgacCACgGCGCAGa -3'
miRNA:   3'- cUGCUUGGCGUCa---GCGC-----GUG-UGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 152747 0.66 0.878824
Target:  5'- uGCGGGCCGCGGcggcCGCGgcgacCACgGCGCAGa -3'
miRNA:   3'- cUGCUUGGCGUCa---GCGC-----GUG-UGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 115043 0.66 0.878824
Target:  5'- cACGGGCUGCAcGUCGCucaGCcCGCGCc- -3'
miRNA:   3'- cUGCUUGGCGU-CAGCG---CGuGUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 80333 0.66 0.878824
Target:  5'- aGGCG-GCCGCGcgcgccGUCGaggcgGCGCGCGCGGg -3'
miRNA:   3'- -CUGCuUGGCGU------CAGCg----CGUGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 91105 0.66 0.87667
Target:  5'- gGGCGcGCCGUccccucgcccccguGGUC-CGCGCGCGCu- -3'
miRNA:   3'- -CUGCuUGGCG--------------UCAGcGCGUGUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 136074 0.66 0.871566
Target:  5'- cACGcGCCGCAgGUCGgccgaGCGCACGaCGAc -3'
miRNA:   3'- cUGCuUGGCGU-CAGCg----CGUGUGC-GUU- -5'
21483 5' -56.7 NC_004812.1 + 117772 0.66 0.871566
Target:  5'- gGACGcgccccccGGCCGCGccggCGCGCGC-CGCAGc -3'
miRNA:   3'- -CUGC--------UUGGCGUca--GCGCGUGuGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 22733 0.66 0.871566
Target:  5'- cGACGAGcCCGUc-UCGCGCGCgGCGUg- -3'
miRNA:   3'- -CUGCUU-GGCGucAGCGCGUG-UGCGuu -5'
21483 5' -56.7 NC_004812.1 + 108390 0.66 0.871566
Target:  5'- -cUGGGCCGCGGggcuccgcUCGCGCcgGCGCAc -3'
miRNA:   3'- cuGCUUGGCGUC--------AGCGCGugUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 54997 0.66 0.871566
Target:  5'- gGGCG-ACCGUAGUCG-GgGCgGCGCAGc -3'
miRNA:   3'- -CUGCuUGGCGUCAGCgCgUG-UGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 2255 0.66 0.871566
Target:  5'- cGGCGGgguCCGC-GUCgGCGUccGCGCGCAg -3'
miRNA:   3'- -CUGCUu--GGCGuCAG-CGCG--UGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 127763 0.66 0.871566
Target:  5'- cGGCGGgguCCGC-GUCgGCGUccGCGCGCAg -3'
miRNA:   3'- -CUGCUu--GGCGuCAG-CGCG--UGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 110421 0.66 0.871566
Target:  5'- gGGCGAGCCGUAccgcguguUCGCGUGgACGCu- -3'
miRNA:   3'- -CUGCUUGGCGUc-------AGCGCGUgUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 50084 0.66 0.871566
Target:  5'- uGACGAaggcGCCGCGGcCGCcggcgccccGCGC-CGCGGa -3'
miRNA:   3'- -CUGCU----UGGCGUCaGCG---------CGUGuGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 101977 0.66 0.871566
Target:  5'- gGACGcccGCCGCccgcgcggggGGUCGCGCGacuCGCGg -3'
miRNA:   3'- -CUGCu--UGGCG----------UCAGCGCGUgu-GCGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.