miRNA display CGI


Results 1 - 20 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 138330 0.66 0.67956
Target:  5'- gCGCGGaggaGGC-CCUGCggaucgcgcacgacgCCugCGACCGg -3'
miRNA:   3'- -GUGCCg---UCGcGGACGa--------------GGugGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 1790 0.66 0.678577
Target:  5'- gACGGgAGCGCgUGCaucgggCC-CCGGCUg -3'
miRNA:   3'- gUGCCgUCGCGgACGa-----GGuGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 61109 0.66 0.678577
Target:  5'- --aGGCGGCGCCccGCggCgCGCCGGCg- -3'
miRNA:   3'- gugCCGUCGCGGa-CGa-G-GUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 89123 0.66 0.678577
Target:  5'- gACGGCccgcgGGCGCCaGC-CCGCgGACg- -3'
miRNA:   3'- gUGCCG-----UCGCGGaCGaGGUGgCUGgu -5'
21488 5' -61.6 NC_004812.1 + 59972 0.66 0.678577
Target:  5'- uCGC-GCGGCGCCgGCUCgUGgCGGCCGu -3'
miRNA:   3'- -GUGcCGUCGCGGaCGAG-GUgGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 60867 0.66 0.678577
Target:  5'- uCGgGGCGcGCGgCUggGCUCCagguGCCGGCCGc -3'
miRNA:   3'- -GUgCCGU-CGCgGA--CGAGG----UGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 18704 0.66 0.678577
Target:  5'- aGCGGCAGcCGCaguaGCUCCGCgGcGCUg -3'
miRNA:   3'- gUGCCGUC-GCGga--CGAGGUGgC-UGGu -5'
21488 5' -61.6 NC_004812.1 + 57686 0.66 0.678577
Target:  5'- cCGCGGUcgAGCGCCaggagcGCUUCuGCCGcGCCAc -3'
miRNA:   3'- -GUGCCG--UCGCGGa-----CGAGG-UGGC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 91706 0.66 0.678577
Target:  5'- aCACGGCGGCcUCUGUgcaAUCGACCc -3'
miRNA:   3'- -GUGCCGUCGcGGACGaggUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 2162 0.66 0.678577
Target:  5'- uCGCGGCGGCgGCCacCUCCACggCGGCg- -3'
miRNA:   3'- -GUGCCGUCG-CGGacGAGGUG--GCUGgu -5'
21488 5' -61.6 NC_004812.1 + 25589 0.66 0.678577
Target:  5'- gACGGCGGggaCGCCUuccccGCggCCGCCGccGCCGc -3'
miRNA:   3'- gUGCCGUC---GCGGA-----CGa-GGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 119973 0.66 0.678577
Target:  5'- cCugGGCGGCGCCcgGCgcccuccucCCGCggcaGACCc -3'
miRNA:   3'- -GugCCGUCGCGGa-CGa--------GGUGg---CUGGu -5'
21488 5' -61.6 NC_004812.1 + 717 0.66 0.678577
Target:  5'- gGCGuCGGCGCCgGCgcggUCGCCGGCgGg -3'
miRNA:   3'- gUGCcGUCGCGGaCGa---GGUGGCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 26163 0.66 0.678577
Target:  5'- -cCGGCcgcccuccAGCGCC-GcCUCCGCgGGCCGc -3'
miRNA:   3'- guGCCG--------UCGCGGaC-GAGGUGgCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 31618 0.66 0.678577
Target:  5'- gGCGuCGGCGCCgGCgcggUCGCCGGCgGg -3'
miRNA:   3'- gUGCcGUCGCGGaCGa---GGUGGCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 127298 0.66 0.678577
Target:  5'- gACGGgAGCGCgUGCaucgggCC-CCGGCUg -3'
miRNA:   3'- gUGCCgUCGCGgACGa-----GGuGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 151097 0.66 0.678577
Target:  5'- gACGGCGGggaCGCCUuccccGCggCCGCCGccGCCGc -3'
miRNA:   3'- gUGCCGUC---GCGGA-----CGa-GGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 86216 0.66 0.678577
Target:  5'- cCGCGGCAGCGaCCUccGUUCggCGCCuuGGCCc -3'
miRNA:   3'- -GUGCCGUCGC-GGA--CGAG--GUGG--CUGGu -5'
21488 5' -61.6 NC_004812.1 + 16703 0.66 0.678577
Target:  5'- gGCGGguGCGCgaGCgaCCGCgGgGCCGg -3'
miRNA:   3'- gUGCCguCGCGgaCGa-GGUGgC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 127671 0.66 0.678577
Target:  5'- uCGCGGCGGCgGCCacCUCCACggCGGCg- -3'
miRNA:   3'- -GUGCCGUCG-CGGacGAGGUG--GCUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.