miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21492 3' -54.7 NC_004812.1 + 147660 0.66 0.953226
Target:  5'- gCACACGGAgUUGC-CgCCAGgGGCu -3'
miRNA:   3'- gGUGUGCCUgGACGuGgGGUUgUUGu -5'
21492 3' -54.7 NC_004812.1 + 76025 0.66 0.953226
Target:  5'- uCCACGCGGuccagggccGCCUccacgucgGCGgCCCAGCGcucGCGg -3'
miRNA:   3'- -GGUGUGCC---------UGGA--------CGUgGGGUUGU---UGU- -5'
21492 3' -54.7 NC_004812.1 + 7985 0.66 0.953226
Target:  5'- gCGCGCGGgcGCCggucagggggGCGCUCCcGCGACc -3'
miRNA:   3'- gGUGUGCC--UGGa---------CGUGGGGuUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 43737 0.66 0.953226
Target:  5'- aCGCGCGGAUgaGCGCguuggcgugagCCCAGC-GCGu -3'
miRNA:   3'- gGUGUGCCUGgaCGUG-----------GGGUUGuUGU- -5'
21492 3' -54.7 NC_004812.1 + 48984 0.66 0.953226
Target:  5'- cCCGCgACGcGGCC-GCagacgugaACCCCGGCGGCc -3'
miRNA:   3'- -GGUG-UGC-CUGGaCG--------UGGGGUUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 95699 0.66 0.953226
Target:  5'- gUCAUugGGugccGCCUGCcgcGCCCCAccgcCGACu -3'
miRNA:   3'- -GGUGugCC----UGGACG---UGGGGUu---GUUGu -5'
21492 3' -54.7 NC_004812.1 + 38887 0.66 0.953226
Target:  5'- gCGCGCGGgcGCCggucagggggGCGCUCCcGCGACc -3'
miRNA:   3'- gGUGUGCC--UGGa---------CGUGGGGuUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 30788 0.66 0.953226
Target:  5'- cCCGCcugcggggccGCGGGCCgaGgGCCCCAcgggggggcaggGCGGCGc -3'
miRNA:   3'- -GGUG----------UGCCUGGa-CgUGGGGU------------UGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 53447 0.66 0.953226
Target:  5'- gCugACGGcgGCCcccGCGCUCCAgacGCAGCGg -3'
miRNA:   3'- gGugUGCC--UGGa--CGUGGGGU---UGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 87147 0.66 0.953226
Target:  5'- gCCGC-UGGugCgGCGCUCCGACcGCc -3'
miRNA:   3'- -GGUGuGCCugGaCGUGGGGUUGuUGu -5'
21492 3' -54.7 NC_004812.1 + 23277 0.66 0.953226
Target:  5'- gCCugAUGGACgUG-GCCCCGACc--- -3'
miRNA:   3'- -GGugUGCCUGgACgUGGGGUUGuugu -5'
21492 3' -54.7 NC_004812.1 + 21727 0.66 0.953226
Target:  5'- aCCACGCGGuACU--CGCCCC-ACGugGu -3'
miRNA:   3'- -GGUGUGCC-UGGacGUGGGGuUGUugU- -5'
21492 3' -54.7 NC_004812.1 + 107701 0.66 0.953226
Target:  5'- aCCACgGCGuGGCCcgcgaGCACCCCGcgcucguaGCGGCc -3'
miRNA:   3'- -GGUG-UGC-CUGGa----CGUGGGGU--------UGUUGu -5'
21492 3' -54.7 NC_004812.1 + 96499 0.66 0.953226
Target:  5'- gCCGCcagcgGCGGAcCCUGC-CCCgGGCAc-- -3'
miRNA:   3'- -GGUG-----UGCCU-GGACGuGGGgUUGUugu -5'
21492 3' -54.7 NC_004812.1 + 88201 0.66 0.953226
Target:  5'- gCCGCGgGGcgaGCCgcgGC-CCCgGACGGCGg -3'
miRNA:   3'- -GGUGUgCC---UGGa--CGuGGGgUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 19605 0.66 0.953226
Target:  5'- gCCAgGCGGGCC--CACgCCAGCcGCGc -3'
miRNA:   3'- -GGUgUGCCUGGacGUGgGGUUGuUGU- -5'
21492 3' -54.7 NC_004812.1 + 67574 0.66 0.953226
Target:  5'- gCCACGCcGGCCcucggUGCAgUCCAACAGg- -3'
miRNA:   3'- -GGUGUGcCUGG-----ACGUgGGGUUGUUgu -5'
21492 3' -54.7 NC_004812.1 + 20522 0.66 0.953226
Target:  5'- uUCAC-CG--UCUGCACCCCgAACAGCu -3'
miRNA:   3'- -GGUGuGCcuGGACGUGGGG-UUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 132061 0.66 0.952825
Target:  5'- uCUACAucucccCGGAgCUGCggguggugacgcaGCCCCGACcGCAg -3'
miRNA:   3'- -GGUGU------GCCUgGACG-------------UGGGGUUGuUGU- -5'
21492 3' -54.7 NC_004812.1 + 67807 0.66 0.952825
Target:  5'- -gGgGCGGGCCcgGCAgCCCCccguccguccgaaAGCAGCAg -3'
miRNA:   3'- ggUgUGCCUGGa-CGU-GGGG-------------UUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.