miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21492 5' -58.1 NC_004812.1 + 71688 0.66 0.849776
Target:  5'- cGGCGgcccgGGGgGGCGUGCUGU-CGGGc- -3'
miRNA:   3'- -UCGCa----CCUgCUGCACGACGcGCUCac -5'
21492 5' -58.1 NC_004812.1 + 125319 0.66 0.849776
Target:  5'- cGCGUGGGgGGCGggGC-GCcGCGGGa- -3'
miRNA:   3'- uCGCACCUgCUGCa-CGaCG-CGCUCac -5'
21492 5' -58.1 NC_004812.1 + 114427 0.66 0.849776
Target:  5'- cGCG-GGugGACG-GC-GCGUGcGUGg -3'
miRNA:   3'- uCGCaCCugCUGCaCGaCGCGCuCAC- -5'
21492 5' -58.1 NC_004812.1 + 33983 0.66 0.849776
Target:  5'- gGGCGgcgGGACGACG-GC-GUGgGGGg- -3'
miRNA:   3'- -UCGCa--CCUGCUGCaCGaCGCgCUCac -5'
21492 5' -58.1 NC_004812.1 + 3082 0.66 0.849776
Target:  5'- gGGCGgcgGGACGACG-GCguggGgGgGAGg- -3'
miRNA:   3'- -UCGCa--CCUGCUGCaCGa---CgCgCUCac -5'
21492 5' -58.1 NC_004812.1 + 60667 0.66 0.849776
Target:  5'- gAGCuccUGGAUGACGagccGCUGCGuCGGGa- -3'
miRNA:   3'- -UCGc--ACCUGCUGCa---CGACGC-GCUCac -5'
21492 5' -58.1 NC_004812.1 + 156382 0.66 0.849776
Target:  5'- gAGCG-GGGCcGCGggggccgggGCUGCGCGAc-- -3'
miRNA:   3'- -UCGCaCCUGcUGCa--------CGACGCGCUcac -5'
21492 5' -58.1 NC_004812.1 + 71746 0.66 0.849776
Target:  5'- gGGCcaGGAUGAcCGUGCcgGCGCGAu-- -3'
miRNA:   3'- -UCGcaCCUGCU-GCACGa-CGCGCUcac -5'
21492 5' -58.1 NC_004812.1 + 30874 0.66 0.849776
Target:  5'- gAGCG-GGGCcGCGggggccgggGCUGCGCGAc-- -3'
miRNA:   3'- -UCGCaCCUGcUGCa--------CGACGCGCUcac -5'
21492 5' -58.1 NC_004812.1 + 156220 0.66 0.849776
Target:  5'- cGCGUGGGgGGCGggGC-GCcGCGGGa- -3'
miRNA:   3'- uCGCACCUgCUGCa-CGaCG-CGCUCac -5'
21492 5' -58.1 NC_004812.1 + 41732 0.66 0.849776
Target:  5'- cGGCGUGGugGugACGggGgUGCGCGuGc- -3'
miRNA:   3'- -UCGCACCugC--UGCa-CgACGCGCuCac -5'
21492 5' -58.1 NC_004812.1 + 16860 0.66 0.841889
Target:  5'- gGGCGggccccgGGAcCGGCGUgGCccGuCGCGGGUGg -3'
miRNA:   3'- -UCGCa------CCU-GCUGCA-CGa-C-GCGCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 45626 0.66 0.841889
Target:  5'- gGGCGcggGGACGGcCGcGCUGCccgcggcgauaGCGAGUc -3'
miRNA:   3'- -UCGCa--CCUGCU-GCaCGACG-----------CGCUCAc -5'
21492 5' -58.1 NC_004812.1 + 62849 0.66 0.841889
Target:  5'- gAG-GUGGACGugGUcGaCcGCGcCGAGUGu -3'
miRNA:   3'- -UCgCACCUGCugCA-C-GaCGC-GCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 114964 0.66 0.841889
Target:  5'- cGGCGUuGGCGACGUcggccucggcGCUGaCGUcaGGGUGg -3'
miRNA:   3'- -UCGCAcCUGCUGCA----------CGAC-GCG--CUCAC- -5'
21492 5' -58.1 NC_004812.1 + 16642 0.66 0.841889
Target:  5'- gGGCGUGGGCGGCcagGCUGaGCaGGa- -3'
miRNA:   3'- -UCGCACCUGCUGca-CGACgCGcUCac -5'
21492 5' -58.1 NC_004812.1 + 6901 0.66 0.84109
Target:  5'- uGUGUGGugGucucgggGCGcGCUGCGCccgcggggccgGGGUGg -3'
miRNA:   3'- uCGCACCugC-------UGCaCGACGCG-----------CUCAC- -5'
21492 5' -58.1 NC_004812.1 + 37802 0.66 0.84109
Target:  5'- uGUGUGGugGucucgggGCGcGCUGCGCccgcggggccgGGGUGg -3'
miRNA:   3'- uCGCACCugC-------UGCaCGACGCG-----------CUCAC- -5'
21492 5' -58.1 NC_004812.1 + 149085 0.66 0.833818
Target:  5'- gGGCGggagGGGCGGCGcgccGCgggGCGgGGGUu -3'
miRNA:   3'- -UCGCa---CCUGCUGCa---CGa--CGCgCUCAc -5'
21492 5' -58.1 NC_004812.1 + 153344 0.66 0.833818
Target:  5'- cGGCGUcuccucGGGCGGCG-GggGCGCGGGc- -3'
miRNA:   3'- -UCGCA------CCUGCUGCaCgaCGCGCUCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.