miRNA display CGI


Results 1 - 20 of 235 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 43720 0.65 0.772296
Target:  5'- gGCGGCUUCGggaacgaacGCGCGGaugaGCGCg -3'
miRNA:   3'- aCGCCGAAGCaguc-----CGCGUCga--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 145531 0.66 0.768556
Target:  5'- gGCGGCUcgcggcgccccgguUCGcgcuggucccggggUCGGGCGCcaccGGCgGCGCc -3'
miRNA:   3'- aCGCCGA--------------AGC--------------AGUCCGCG----UCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 144971 0.66 0.764798
Target:  5'- cGCGGCgagCGUCuGGaCGgAGCgccuggccgUGCGCc -3'
miRNA:   3'- aCGCCGaa-GCAGuCC-GCgUCG---------ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 54381 0.66 0.764798
Target:  5'- -cUGGC--CGUCGGGCGCccGCggGCACg -3'
miRNA:   3'- acGCCGaaGCAGUCCGCGu-CGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 94487 0.66 0.764798
Target:  5'- gGCGGUUUCGcggCcgGGGC-CAGC-GCGCg -3'
miRNA:   3'- aCGCCGAAGCa--G--UCCGcGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 74155 0.66 0.764798
Target:  5'- aGCGGCguucCGUCcgGGGUcagGUAGCUGguCg -3'
miRNA:   3'- aCGCCGaa--GCAG--UCCG---CGUCGACguG- -5'
21499 3' -59.1 NC_004812.1 + 54532 0.66 0.764798
Target:  5'- cUGCGGUccgUCuUCGGGgGCGGCgacuccgacgGCGCc -3'
miRNA:   3'- -ACGCCGa--AGcAGUCCgCGUCGa---------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 29243 0.66 0.764798
Target:  5'- cGCGGaggaG-CGGGcCGgGGCUGCGCg -3'
miRNA:   3'- aCGCCgaagCaGUCC-GCgUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 154751 0.66 0.764798
Target:  5'- cGCGGaggaG-CGGGcCGgGGCUGCGCg -3'
miRNA:   3'- aCGCCgaagCaGUCC-GCgUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 59266 0.66 0.759125
Target:  5'- gGCGGUgcgcgggaucagggUCG-CGGGCGC-GCgGCACc -3'
miRNA:   3'- aCGCCGa-------------AGCaGUCCGCGuCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 87136 0.66 0.755321
Target:  5'- gGCGGCggcgCGcCAgGGCGUgcucGGCcGCGCg -3'
miRNA:   3'- aCGCCGaa--GCaGU-CCGCG----UCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 124208 0.66 0.755321
Target:  5'- cGCGGCggCGaCcgAGGcCGCGGC-GCACc -3'
miRNA:   3'- aCGCCGaaGCaG--UCC-GCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 110360 0.66 0.755321
Target:  5'- cGCGGgUgaUCcaaCAGGCGguGCUGCu- -3'
miRNA:   3'- aCGCCgA--AGca-GUCCGCguCGACGug -5'
21499 3' -59.1 NC_004812.1 + 142421 0.66 0.755321
Target:  5'- cGCGGCgacgcagUUGUCcGcGCGuCGGCcGCGCg -3'
miRNA:   3'- aCGCCGa------AGCAGuC-CGC-GUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 94285 0.66 0.755321
Target:  5'- cGCGGCccgggCGUgcgccUGGGUGCgcuuggucgccGGCUGCGCg -3'
miRNA:   3'- aCGCCGaa---GCA-----GUCCGCG-----------UCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 76120 0.66 0.755321
Target:  5'- gGCGGCcucgagcUCGUCGGcGCGCcGCcGCGu -3'
miRNA:   3'- aCGCCGa------AGCAGUC-CGCGuCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 74062 0.66 0.755321
Target:  5'- gGCGGCagCGgCGGGCGCGcGCggGC-Cg -3'
miRNA:   3'- aCGCCGaaGCaGUCCGCGU-CGa-CGuG- -5'
21499 3' -59.1 NC_004812.1 + 95945 0.66 0.754367
Target:  5'- aGCGGC-UCGUCAuccaggagcucacGGuCGCgcgccaggGGCUGUACc -3'
miRNA:   3'- aCGCCGaAGCAGU-------------CC-GCG--------UCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 124238 0.66 0.745736
Target:  5'- gGCGGCgggccuggCGggGGGCGCGcGCggcgGCGCc -3'
miRNA:   3'- aCGCCGaa------GCagUCCGCGU-CGa---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 126973 0.66 0.745736
Target:  5'- gGCGGCgacgccggCGUCcucggcGGGCGgCGGCggaGCGCc -3'
miRNA:   3'- aCGCCGaa------GCAG------UCCGC-GUCGa--CGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.