miRNA display CGI


Results 1 - 20 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 143249 0.66 0.949272
Target:  5'- -aGCaaGCAGCAGCugGugGugGCgCGg -3'
miRNA:   3'- gaCGc-CGUCGUCGugCugCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 130411 0.66 0.949272
Target:  5'- -gGCGGC-GCGcGCGCGcCGccGCUCGc -3'
miRNA:   3'- gaCGCCGuCGU-CGUGCuGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 4903 0.66 0.949272
Target:  5'- -gGCGGC-GCGcGCGCGcCGccGCUCGc -3'
miRNA:   3'- gaCGCCGuCGU-CGUGCuGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 21084 0.66 0.949272
Target:  5'- -cGCGGCGGCcGagGCGGCGAAgacGC-CGa -3'
miRNA:   3'- gaCGCCGUCGuCg-UGCUGCUU---UGaGC- -5'
21499 5' -54.8 NC_004812.1 + 35474 0.66 0.949272
Target:  5'- -cGCGGCGuCGGCGCG-CGAGAUcccCGa -3'
miRNA:   3'- gaCGCCGUcGUCGUGCuGCUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 147633 0.66 0.949272
Target:  5'- uCUGCGcGcCAGUgGGCGCGACGA--UUCGu -3'
miRNA:   3'- -GACGC-C-GUCG-UCGUGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 66008 0.66 0.949272
Target:  5'- -cGCGGuCAGCAuGCGauCGAUGAGGCg-- -3'
miRNA:   3'- gaCGCC-GUCGU-CGU--GCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 59526 0.66 0.949272
Target:  5'- -gGgGGCGGUAGC-CGA-GgcGCUCGg -3'
miRNA:   3'- gaCgCCGUCGUCGuGCUgCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 119050 0.66 0.949272
Target:  5'- -cGUGGCGGgcugccacauCGGCACGGCG-GACUUu -3'
miRNA:   3'- gaCGCCGUC----------GUCGUGCUGCuUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 66706 0.66 0.949272
Target:  5'- -cGCGGCGaaGGaCGCGGCGAAGaagaugccCUCGa -3'
miRNA:   3'- gaCGCCGUcgUC-GUGCUGCUUU--------GAGC- -5'
21499 5' -54.8 NC_004812.1 + 16701 0.66 0.948847
Target:  5'- --cCGGCGGguGCGCGagcgaccGCGggGC-CGg -3'
miRNA:   3'- gacGCCGUCguCGUGC-------UGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 26199 0.66 0.946686
Target:  5'- -gGCGGCGcGUAGUccGCcagcaggcucugggaGGCGGGACUCGa -3'
miRNA:   3'- gaCGCCGU-CGUCG--UG---------------CUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 132877 0.66 0.944915
Target:  5'- aUGUGGCGGaagaAGCGgGuGCGguGCUCGc -3'
miRNA:   3'- gACGCCGUCg---UCGUgC-UGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 122628 0.66 0.944915
Target:  5'- -gGCGGCucGCAGUgguaGAagaGGAGCUCGg -3'
miRNA:   3'- gaCGCCGu-CGUCGug--CUg--CUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 71900 0.66 0.944915
Target:  5'- -gGCGGgCcgGGCGGCGCGGCGccGCgggCGc -3'
miRNA:   3'- gaCGCC-G--UCGUCGUGCUGCuuUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 54531 0.66 0.944915
Target:  5'- cCUGCGGUccgucuucgggGGCGGCGacucCGACGgcGC-CGg -3'
miRNA:   3'- -GACGCCG-----------UCGUCGU----GCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 115790 0.66 0.944915
Target:  5'- -cGCcGguGCGGCACGAaGggGCgagCGa -3'
miRNA:   3'- gaCGcCguCGUCGUGCUgCuuUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 142492 0.66 0.944915
Target:  5'- -gGCuGGCGGCGuucacGCACGGCGc-GCUCc -3'
miRNA:   3'- gaCG-CCGUCGU-----CGUGCUGCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 79052 0.66 0.944915
Target:  5'- -cGCGGCccAGCGGC-CGgacGCGuuuGCUCGu -3'
miRNA:   3'- gaCGCCG--UCGUCGuGC---UGCuu-UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 136704 0.66 0.944915
Target:  5'- -gGUGGCGGCGGCGCGG-GccGC-CGg -3'
miRNA:   3'- gaCGCCGUCGUCGUGCUgCuuUGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.