miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21501 3' -60.6 NC_004812.1 + 141100 0.66 0.754391
Target:  5'- gGCGgCGuCGUcUCCuCCCCCUCaUCg- -3'
miRNA:   3'- gCGCgGC-GCAaAGG-GGGGGAGaAGga -5'
21501 3' -60.6 NC_004812.1 + 33963 0.66 0.754391
Target:  5'- gGgGUCGCGg-UCCCCgagcUCCUCUUCUa -3'
miRNA:   3'- gCgCGGCGCaaAGGGG----GGGAGAAGGa -5'
21501 3' -60.6 NC_004812.1 + 119727 0.66 0.754391
Target:  5'- gGCGCCuaccaccccGCGUacucgCCCCCCCgcgCcUCCc -3'
miRNA:   3'- gCGCGG---------CGCAaa---GGGGGGGa--GaAGGa -5'
21501 3' -60.6 NC_004812.1 + 106082 0.66 0.754391
Target:  5'- gGUGUCGCGgccugCgCCUCCUCUgUCCg -3'
miRNA:   3'- gCGCGGCGCaaa--GgGGGGGAGA-AGGa -5'
21501 3' -60.6 NC_004812.1 + 90501 0.66 0.754391
Target:  5'- gGCGCCuGCGa--CCCCCgCCugcUCUUCUa -3'
miRNA:   3'- gCGCGG-CGCaaaGGGGG-GG---AGAAGGa -5'
21501 3' -60.6 NC_004812.1 + 138154 0.66 0.754391
Target:  5'- gGgGCCGCG---CCCCCCCg---CCg -3'
miRNA:   3'- gCgCGGCGCaaaGGGGGGGagaaGGa -5'
21501 3' -60.6 NC_004812.1 + 19708 0.66 0.754391
Target:  5'- uCGgGCCcaacgGCGUacccgUCgCCCCCCUCcucgUCCg -3'
miRNA:   3'- -GCgCGG-----CGCAa----AG-GGGGGGAGa---AGGa -5'
21501 3' -60.6 NC_004812.1 + 125986 0.66 0.754391
Target:  5'- cCGCGuCCGCGcggCCCgucaCCCCUUcUCCc -3'
miRNA:   3'- -GCGC-GGCGCaaaGGG----GGGGAGaAGGa -5'
21501 3' -60.6 NC_004812.1 + 478 0.66 0.754391
Target:  5'- cCGCGuCCGCGcggCCCgucaCCCCUUcUCCc -3'
miRNA:   3'- -GCGC-GGCGCaaaGGG----GGGGAGaAGGa -5'
21501 3' -60.6 NC_004812.1 + 51634 0.66 0.754391
Target:  5'- cCGCgGCCGCGUgcgcgCCgagagCCCCUCUcCCc -3'
miRNA:   3'- -GCG-CGGCGCAaa---GGg----GGGGAGAaGGa -5'
21501 3' -60.6 NC_004812.1 + 112238 0.66 0.753465
Target:  5'- gGCGCCGCGggcugcgCCCCgggcacgCCCUUUgCCc -3'
miRNA:   3'- gCGCGGCGCaaa----GGGG-------GGGAGAaGGa -5'
21501 3' -60.6 NC_004812.1 + 137813 0.66 0.745087
Target:  5'- gGCGCCGCGgagcaggCCCccuggCCCCgggaggUCCUg -3'
miRNA:   3'- gCGCGGCGCaaa----GGG-----GGGGaga---AGGA- -5'
21501 3' -60.6 NC_004812.1 + 151975 0.66 0.745087
Target:  5'- cCGCGCgGgCGUcccgCCCCCCCgcc-CCUa -3'
miRNA:   3'- -GCGCGgC-GCAaa--GGGGGGGagaaGGA- -5'
21501 3' -60.6 NC_004812.1 + 121074 0.66 0.745087
Target:  5'- cCGCGCgGgCGUcccgCCCCCCCgcc-CCUa -3'
miRNA:   3'- -GCGCGgC-GCAaa--GGGGGGGagaaGGA- -5'
21501 3' -60.6 NC_004812.1 + 70009 0.66 0.745087
Target:  5'- cCGCGCCGCGg--CCCgCaaCUUCaUCCg -3'
miRNA:   3'- -GCGCGGCGCaaaGGGgG--GGAGaAGGa -5'
21501 3' -60.6 NC_004812.1 + 1047 0.66 0.735691
Target:  5'- cCGCGCgCGCccc-UCCCCCCUCccCCg -3'
miRNA:   3'- -GCGCG-GCGcaaaGGGGGGGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 126556 0.66 0.735691
Target:  5'- cCGCGCgCGCccc-UCCCCCCUCccCCg -3'
miRNA:   3'- -GCGCG-GCGcaaaGGGGGGGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 96053 0.66 0.735691
Target:  5'- uGCuCCGCcgg-CCCUCCCUCUcgaUCCg -3'
miRNA:   3'- gCGcGGCGcaaaGGGGGGGAGA---AGGa -5'
21501 3' -60.6 NC_004812.1 + 118434 0.66 0.735691
Target:  5'- gGC-CCGCGggUCCCUCCCgCgggCCc -3'
miRNA:   3'- gCGcGGCGCaaAGGGGGGGaGaa-GGa -5'
21501 3' -60.6 NC_004812.1 + 121516 0.66 0.726211
Target:  5'- gGCGCCGCGggggCgCCCUCggcgUCCa -3'
miRNA:   3'- gCGCGGCGCaaa-GgGGGGGaga-AGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.