miRNA display CGI


Results 1 - 20 of 391 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21501 5' -52.1 NC_004812.1 + 55976 0.66 0.983597
Target:  5'- -cAGCgCCGCcagGCGGucGCcGAACGCGCGc -3'
miRNA:   3'- uaUCG-GGCG---CGCCu-UGuUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 73779 0.66 0.983597
Target:  5'- --uGCCCGCGggcucCGcGAGCGGGGCGgGCGc -3'
miRNA:   3'- uauCGGGCGC-----GC-CUUGUUUUGUgUGU- -5'
21501 5' -52.1 NC_004812.1 + 36417 0.66 0.983597
Target:  5'- -gGGCgCCGCGCagcaGGGACAcgGCGgGCc -3'
miRNA:   3'- uaUCG-GGCGCG----CCUUGUuuUGUgUGu -5'
21501 5' -52.1 NC_004812.1 + 107898 0.66 0.983597
Target:  5'- -gGGCCgcaCGCGCGGugcAACAGGuACAgACAg -3'
miRNA:   3'- uaUCGG---GCGCGCC---UUGUUU-UGUgUGU- -5'
21501 5' -52.1 NC_004812.1 + 45429 0.66 0.983597
Target:  5'- -cAGCCCGUagGCGGucACGAGGCAgAgGg -3'
miRNA:   3'- uaUCGGGCG--CGCCu-UGUUUUGUgUgU- -5'
21501 5' -52.1 NC_004812.1 + 16924 0.66 0.983597
Target:  5'- cAUGGCCUGCGaGGugcGGCAGGcuACGCGCc -3'
miRNA:   3'- -UAUCGGGCGCgCC---UUGUUU--UGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 144625 0.66 0.983597
Target:  5'- -gAGCCCGCcgGCGGAACcccGCcccCGCGg -3'
miRNA:   3'- uaUCGGGCG--CGCCUUGuuuUGu--GUGU- -5'
21501 5' -52.1 NC_004812.1 + 5516 0.66 0.983597
Target:  5'- -gGGCgCCGCGCagcaGGGACAcgGCGgGCc -3'
miRNA:   3'- uaUCG-GGCGCG----CCUUGUuuUGUgUGu -5'
21501 5' -52.1 NC_004812.1 + 119156 0.66 0.983597
Target:  5'- --cGCCC-CGCGGAcUGGAcCACGCAc -3'
miRNA:   3'- uauCGGGcGCGCCUuGUUUuGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 16108 0.66 0.983597
Target:  5'- --cGCCUGCGCGaGAC-GAACACGg- -3'
miRNA:   3'- uauCGGGCGCGCcUUGuUUUGUGUgu -5'
21501 5' -52.1 NC_004812.1 + 53210 0.66 0.983597
Target:  5'- cUGGgCCGUcuacGCGGAGCAGGuCAUGCGc -3'
miRNA:   3'- uAUCgGGCG----CGCCUUGUUUuGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 136178 0.66 0.983597
Target:  5'- --cGUCCGCGgacgucCGGGGCAGGGC-CGCGu -3'
miRNA:   3'- uauCGGGCGC------GCCUUGUUUUGuGUGU- -5'
21501 5' -52.1 NC_004812.1 + 11301 0.66 0.983597
Target:  5'- --cGCgCCGCGCGGGGCGc--CGCGgGg -3'
miRNA:   3'- uauCG-GGCGCGCCUUGUuuuGUGUgU- -5'
21501 5' -52.1 NC_004812.1 + 75682 0.66 0.983597
Target:  5'- -cGGCCUGCGCGaGGuccaGCAGccccccgguGAUGCGCAg -3'
miRNA:   3'- uaUCGGGCGCGC-CU----UGUU---------UUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 21265 0.66 0.983597
Target:  5'- -aAGCgCGCGCGGAcGCAguuGAGCGucaGCAg -3'
miRNA:   3'- uaUCGgGCGCGCCU-UGU---UUUGUg--UGU- -5'
21501 5' -52.1 NC_004812.1 + 53255 0.66 0.983597
Target:  5'- -gGGCCUGUGUugcgaccuGGAGC-AGGCGCGCc -3'
miRNA:   3'- uaUCGGGCGCG--------CCUUGuUUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 98752 0.66 0.983597
Target:  5'- --cGCCCGCGCccuGGAGCGcgGCG-GCGg -3'
miRNA:   3'- uauCGGGCGCG---CCUUGUuuUGUgUGU- -5'
21501 5' -52.1 NC_004812.1 + 19008 0.66 0.983597
Target:  5'- -aGGCCCGCggccGCGGGccggcGCAGcGCGgGCGg -3'
miRNA:   3'- uaUCGGGCG----CGCCU-----UGUUuUGUgUGU- -5'
21501 5' -52.1 NC_004812.1 + 3216 0.66 0.983597
Target:  5'- -gGGCCCgaggcGCGCGGcgGGCcGAAgGCGCGg -3'
miRNA:   3'- uaUCGGG-----CGCGCC--UUGuUUUgUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 117724 0.66 0.983597
Target:  5'- -aAGgCCGUGCGGAgccucgacgACGucGCGCGCc -3'
miRNA:   3'- uaUCgGGCGCGCCU---------UGUuuUGUGUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.