miRNA display CGI


Results 1 - 20 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21502 3' -62.4 NC_004812.1 + 109668 0.66 0.66957
Target:  5'- cGCG-GGACgCGCGGcUgUCGGCgGCGGAu -3'
miRNA:   3'- -UGCuCCUG-GCGCC-AgGGCUGgCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 78317 0.66 0.66957
Target:  5'- gGCGGGGGCgGaGGgCCCGGCCuCGGg -3'
miRNA:   3'- -UGCUCCUGgCgCCaGGGCUGGcGCUu -5'
21502 3' -62.4 NC_004812.1 + 125841 0.66 0.66957
Target:  5'- gGCGGGGccggcucgcCCGCGGcCCCGGgcaUCGUGGAg -3'
miRNA:   3'- -UGCUCCu--------GGCGCCaGGGCU---GGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 76574 0.66 0.66957
Target:  5'- uCGGGacuGGCCGUGG-CCaCGGCCGCGc- -3'
miRNA:   3'- uGCUC---CUGGCGCCaGG-GCUGGCGCuu -5'
21502 3' -62.4 NC_004812.1 + 45629 0.66 0.66957
Target:  5'- cGCGGGGacgGCCGCGcugCCCG-CgGCGAu -3'
miRNA:   3'- -UGCUCC---UGGCGCca-GGGCuGgCGCUu -5'
21502 3' -62.4 NC_004812.1 + 31553 0.66 0.66957
Target:  5'- cGCGAGcGACgaaCGCGacCUCGGCCGCGAc -3'
miRNA:   3'- -UGCUC-CUG---GCGCcaGGGCUGGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 88841 0.66 0.66957
Target:  5'- cGCGccccGGGCCGCcgccUCCCccggGACCGCGAAg -3'
miRNA:   3'- -UGCu---CCUGGCGcc--AGGG----CUGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 27594 0.66 0.66957
Target:  5'- cCG-GGGCCGcCGGcCCCGGgcCCGCGc- -3'
miRNA:   3'- uGCuCCUGGC-GCCaGGGCU--GGCGCuu -5'
21502 3' -62.4 NC_004812.1 + 109456 0.66 0.66957
Target:  5'- -aGAGGGCggCGCGGgggcgCCCGcggGCUGCGGc -3'
miRNA:   3'- ugCUCCUG--GCGCCa----GGGC---UGGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 153102 0.66 0.66957
Target:  5'- cCG-GGGCCGcCGGcCCCGGgcCCGCGc- -3'
miRNA:   3'- uGCuCCUGGC-GCCaGGGCU--GGCGCuu -5'
21502 3' -62.4 NC_004812.1 + 79625 0.66 0.66957
Target:  5'- gUGAGGgcggccgugGCCgGCGGcCCCGGCCcgGCGGGa -3'
miRNA:   3'- uGCUCC---------UGG-CGCCaGGGCUGG--CGCUU- -5'
21502 3' -62.4 NC_004812.1 + 63010 0.66 0.66957
Target:  5'- aGCGcGGGCCGcCGcGUCCgCGAgCGCGc- -3'
miRNA:   3'- -UGCuCCUGGC-GC-CAGG-GCUgGCGCuu -5'
21502 3' -62.4 NC_004812.1 + 93830 0.66 0.66957
Target:  5'- cGCGcAGGGCCGCGG-CCau-CCGCu-- -3'
miRNA:   3'- -UGC-UCCUGGCGCCaGGgcuGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 124057 0.66 0.66957
Target:  5'- -gGGGGGCCGCGG-CCa-GCUGCGc- -3'
miRNA:   3'- ugCUCCUGGCGCCaGGgcUGGCGCuu -5'
21502 3' -62.4 NC_004812.1 + 50353 0.66 0.66957
Target:  5'- cCGAGGGCCacGCGGUagggcgccCCCGacGCCGgGGg -3'
miRNA:   3'- uGCUCCUGG--CGCCA--------GGGC--UGGCgCUu -5'
21502 3' -62.4 NC_004812.1 + 76979 0.66 0.66957
Target:  5'- gGCcGGGGCCGcCGG-CCaCGGCCGCc-- -3'
miRNA:   3'- -UGcUCCUGGC-GCCaGG-GCUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 40778 0.66 0.668599
Target:  5'- -gGAGGuacauucGCCgGCGG-CCCGGCCGCc-- -3'
miRNA:   3'- ugCUCC-------UGG-CGCCaGGGCUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 41213 0.66 0.663741
Target:  5'- cGCGGGGcggcgacuacgcGCUGCGGUCgCCGccuucgucugucggcGCCGCGu- -3'
miRNA:   3'- -UGCUCC------------UGGCGCCAG-GGC---------------UGGCGCuu -5'
21502 3' -62.4 NC_004812.1 + 44256 0.66 0.65985
Target:  5'- cGCGAGGGCCGauagccgcUGGUCgcgcgCGACCGCc-- -3'
miRNA:   3'- -UGCUCCUGGC--------GCCAGg----GCUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 80504 0.66 0.65985
Target:  5'- uCGAGGccgccGCCGCGGaCCUGGCggagaagcuCGCGGAc -3'
miRNA:   3'- uGCUCC-----UGGCGCCaGGGCUG---------GCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.