miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21502 5' -54.8 NC_004812.1 + 62155 0.66 0.962602
Target:  5'- gCGccCAgGGAaacGAGGAAGAGCggCCGGg -3'
miRNA:   3'- -GCauGUgCCU---UUCCUUCUCGggGGCC- -5'
21502 5' -54.8 NC_004812.1 + 82351 0.66 0.962602
Target:  5'- gGUGCGCGGccGGGgcGAGgcguaCCUgCGGg -3'
miRNA:   3'- gCAUGUGCCuuUCCuuCUC-----GGGgGCC- -5'
21502 5' -54.8 NC_004812.1 + 28984 0.66 0.962602
Target:  5'- cCGgACugGGAcuGGGAcugGGAGCgcggCCCGGg -3'
miRNA:   3'- -GCaUGugCCUu-UCCU---UCUCGg---GGGCC- -5'
21502 5' -54.8 NC_004812.1 + 152166 0.66 0.962602
Target:  5'- gGUACuCGGgcGGGGacacgcggcccGGGGCCgCCuCGGg -3'
miRNA:   3'- gCAUGuGCCuuUCCU-----------UCUCGG-GG-GCC- -5'
21502 5' -54.8 NC_004812.1 + 105910 0.66 0.962602
Target:  5'- aCGgcgGCGCGGcuc-GccGAGUCCCCGGc -3'
miRNA:   3'- -GCa--UGUGCCuuucCuuCUCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 11694 0.66 0.962602
Target:  5'- cCGUACACGGuGAcGGugauguagauGGAGUCCUCGc -3'
miRNA:   3'- -GCAUGUGCCuUU-CCu---------UCUCGGGGGCc -5'
21502 5' -54.8 NC_004812.1 + 121265 0.66 0.962602
Target:  5'- gGUACuCGGgcGGGGacacgcggcccGGGGCCgCCuCGGg -3'
miRNA:   3'- gCAUGuGCCuuUCCU-----------UCUCGG-GG-GCC- -5'
21502 5' -54.8 NC_004812.1 + 44956 0.66 0.962602
Target:  5'- gGUACACGaGcgccGAGGggGcgcgcaggaGGCCCgCGGc -3'
miRNA:   3'- gCAUGUGC-Cu---UUCCuuC---------UCGGGgGCC- -5'
21502 5' -54.8 NC_004812.1 + 116399 0.66 0.962602
Target:  5'- --aACGCGGAcccccGcGcAGAGCCCCCGcGg -3'
miRNA:   3'- gcaUGUGCCUuu---C-CuUCUCGGGGGC-C- -5'
21502 5' -54.8 NC_004812.1 + 15115 0.66 0.962602
Target:  5'- gGUGCGcCGGuacGGcGGcGCCCCCGa -3'
miRNA:   3'- gCAUGU-GCCuuuCCuUCuCGGGGGCc -5'
21502 5' -54.8 NC_004812.1 + 97798 0.66 0.962602
Target:  5'- aGUcCAgggUGGggGcucGGAAGAGCCggggCCCGGa -3'
miRNA:   3'- gCAuGU---GCCuuU---CCUUCUCGG----GGGCC- -5'
21502 5' -54.8 NC_004812.1 + 154493 0.66 0.962602
Target:  5'- cCGgACugGGAcuGGGAcugGGAGCgcggCCCGGg -3'
miRNA:   3'- -GCaUGugCCUu-UCCU---UCUCGg---GGGCC- -5'
21502 5' -54.8 NC_004812.1 + 62525 0.66 0.962602
Target:  5'- --cGCACGcGAgcGGGcggcaGGGGUUCCCGGg -3'
miRNA:   3'- gcaUGUGC-CUuuCCU-----UCUCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 60057 0.66 0.962262
Target:  5'- uGUGCucgcgcgacaGCGGcAGGGcGGAGCgcacgcgggcgagCCCCGGg -3'
miRNA:   3'- gCAUG----------UGCCuUUCCuUCUCG-------------GGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 155009 0.66 0.959103
Target:  5'- --cGCGCGGGgcgcccggAGGcGggGAGCCgugcgggggggaCCCGGg -3'
miRNA:   3'- gcaUGUGCCU--------UUC-CuuCUCGG------------GGGCC- -5'
21502 5' -54.8 NC_004812.1 + 70589 0.66 0.959103
Target:  5'- gCGUugGCcGAGAGGGgcgGGGGCCCgaaguaggagcUCGGa -3'
miRNA:   3'- -GCAugUGcCUUUCCU---UCUCGGG-----------GGCC- -5'
21502 5' -54.8 NC_004812.1 + 19115 0.66 0.959103
Target:  5'- aGUGCGcCGGGGuuGAccaGGAGCCCCgCGc -3'
miRNA:   3'- gCAUGU-GCCUUucCU---UCUCGGGG-GCc -5'
21502 5' -54.8 NC_004812.1 + 3966 0.66 0.959103
Target:  5'- cCGgGCACGGcggccAGGucgccgccGAGCCCUCGGc -3'
miRNA:   3'- -GCaUGUGCCuu---UCCuu------CUCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 38563 0.66 0.959103
Target:  5'- gGUGC-CGcGggGGGAAGAuccgcggguccGCCuggCCCGGc -3'
miRNA:   3'- gCAUGuGC-CuuUCCUUCU-----------CGG---GGGCC- -5'
21502 5' -54.8 NC_004812.1 + 144072 0.66 0.959103
Target:  5'- uCGcgGCGCGGAAGGGAgaagaaccgagcAGGcgaacaugcGCCCCCc- -3'
miRNA:   3'- -GCa-UGUGCCUUUCCU------------UCU---------CGGGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.