miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21503 3' -60.7 NC_004812.1 + 59249 0.66 0.777705
Target:  5'- gCgGCGAGCUgCuUGG-CGGCGGugcgcgggaucaGGGUCg -3'
miRNA:   3'- -GgCGCUCGA-GcACCaGCUGCC------------CCCAG- -5'
21503 3' -60.7 NC_004812.1 + 152146 0.66 0.777705
Target:  5'- gCCGUGGGCgg--GGUCGcCGGGGuacUCg -3'
miRNA:   3'- -GGCGCUCGagcaCCAGCuGCCCCc--AG- -5'
21503 3' -60.7 NC_004812.1 + 69776 0.66 0.777705
Target:  5'- gCCGCguuuuugugguuGAGCUCcagcgGGacgggaaacgUCGACGGGGGcCg -3'
miRNA:   3'- -GGCG------------CUCGAGca---CC----------AGCUGCCCCCaG- -5'
21503 3' -60.7 NC_004812.1 + 121245 0.66 0.777705
Target:  5'- gCCGUGGGCgg--GGUCGcCGGGGuacUCg -3'
miRNA:   3'- -GGCGCUCGagcaCCAGCuGCCCCc--AG- -5'
21503 3' -60.7 NC_004812.1 + 147704 0.66 0.777705
Target:  5'- cCCGgGGGUcgUGUGG-CG-CGGGGGg- -3'
miRNA:   3'- -GGCgCUCGa-GCACCaGCuGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 19125 0.66 0.777705
Target:  5'- cCCGCcAGCUCGgcgUGGgcggccagCGccGCGGGGGg- -3'
miRNA:   3'- -GGCGcUCGAGC---ACCa-------GC--UGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 107332 0.66 0.772374
Target:  5'- gCCGCGGucGcCUUGUGuGUCGauucggccguuggggGCGGGGGg- -3'
miRNA:   3'- -GGCGCU--C-GAGCAC-CAGC---------------UGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 88208 0.66 0.772374
Target:  5'- -gGCGAGCcgCGgccccggacggcggcUGGgCGGCGGGGG-Cg -3'
miRNA:   3'- ggCGCUCGa-GC---------------ACCaGCUGCCCCCaG- -5'
21503 3' -60.7 NC_004812.1 + 142384 0.66 0.768797
Target:  5'- cCCgGCGcGC-CGUGGcCGcCGGGGG-Cg -3'
miRNA:   3'- -GG-CGCuCGaGCACCaGCuGCCCCCaG- -5'
21503 3' -60.7 NC_004812.1 + 36745 0.66 0.768797
Target:  5'- gCgGCGcGCUCG-GGa-GGCGGGGGg- -3'
miRNA:   3'- -GgCGCuCGAGCaCCagCUGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 17414 0.66 0.768797
Target:  5'- gCGgGGGUg-GUGGUgggGGCGGGGGUg -3'
miRNA:   3'- gGCgCUCGagCACCAg--CUGCCCCCAg -5'
21503 3' -60.7 NC_004812.1 + 17378 0.66 0.768797
Target:  5'- gCGgGGGUg-GUGGUgggGGCGGGGGUg -3'
miRNA:   3'- gGCgCUCGagCACCAg--CUGCCCCCAg -5'
21503 3' -60.7 NC_004812.1 + 17342 0.66 0.768797
Target:  5'- gCGgGGGUg-GUGGUgggGGCGGGGGUg -3'
miRNA:   3'- gGCgCUCGagCACCAg--CUGCCCCCAg -5'
21503 3' -60.7 NC_004812.1 + 5844 0.66 0.768797
Target:  5'- gCgGCGcGCUCG-GGa-GGCGGGGGg- -3'
miRNA:   3'- -GgCGCuCGAGCaCCagCUGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 36591 0.66 0.767002
Target:  5'- gCCGgGGGuCUCccagggccacgGGggGGCGGGGGUCu -3'
miRNA:   3'- -GGCgCUC-GAGca---------CCagCUGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 5690 0.66 0.767002
Target:  5'- gCCGgGGGuCUCccagggccacgGGggGGCGGGGGUCu -3'
miRNA:   3'- -GGCgCUC-GAGca---------CCagCUGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 53286 0.66 0.766103
Target:  5'- gCCGCgcgaacucgaccGAGgaCGUGGUCuuGAUgcgcuccacgucggGGGGGUCg -3'
miRNA:   3'- -GGCG------------CUCgaGCACCAG--CUG--------------CCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 13319 0.66 0.763399
Target:  5'- gCCGCGccggGGgUCGggGGUgCGGCggucccuuccgcgccGGGGGUCg -3'
miRNA:   3'- -GGCGC----UCgAGCa-CCA-GCUG---------------CCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 156435 0.66 0.759779
Target:  5'- gCGCGuuUUCG-GGg-GGCGGGGGUUc -3'
miRNA:   3'- gGCGCucGAGCaCCagCUGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 125534 0.66 0.759779
Target:  5'- gCGCGuuUUCG-GGg-GGCGGGGGUUc -3'
miRNA:   3'- gGCGCucGAGCaCCagCUGCCCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.