miRNA display CGI


Results 1 - 20 of 271 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21503 5' -59.3 NC_004812.1 + 12531 0.66 0.778689
Target:  5'- -gGGACUCCuccagcagcUCCGCCaGGCCCCcgGCGg -3'
miRNA:   3'- aaUUUGAGGc--------AGGUGGgCCGGGG--CGU- -5'
21503 5' -59.3 NC_004812.1 + 130962 0.66 0.778689
Target:  5'- -cGAACgagCCGgCCGCCCGcGCgCUGCu -3'
miRNA:   3'- aaUUUGa--GGCaGGUGGGC-CGgGGCGu -5'
21503 5' -59.3 NC_004812.1 + 58622 0.66 0.778689
Target:  5'- -cGAGCccCCGUgCCuCCCGGCCCacCGCc -3'
miRNA:   3'- aaUUUGa-GGCA-GGuGGGCCGGG--GCGu -5'
21503 5' -59.3 NC_004812.1 + 124778 0.66 0.778689
Target:  5'- ---cGCUCgGUCUcgCUGGUCCCGCGg -3'
miRNA:   3'- aauuUGAGgCAGGugGGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 63790 0.66 0.778689
Target:  5'- ---uACUaCG-CCGCCgGGCCCgCGCAg -3'
miRNA:   3'- aauuUGAgGCaGGUGGgCCGGG-GCGU- -5'
21503 5' -59.3 NC_004812.1 + 5214 0.66 0.778689
Target:  5'- --cGACUCCGaggCCgaGCCggcguCGGCCUCGCGg -3'
miRNA:   3'- aauUUGAGGCa--GG--UGG-----GCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 78304 0.66 0.777774
Target:  5'- ----cCUCCGcccCCGCCCcggcgugcgugcgGGCCCCGUu -3'
miRNA:   3'- aauuuGAGGCa--GGUGGG-------------CCGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 134994 0.66 0.76948
Target:  5'- -cGAGCgccgCCGggccgacUCGCCCGGuCCCCGUc -3'
miRNA:   3'- aaUUUGa---GGCa------GGUGGGCC-GGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 28507 0.66 0.76948
Target:  5'- -gGGGCUCCGcggCCACCUaagaccaGCCCCgGCGg -3'
miRNA:   3'- aaUUUGAGGCa--GGUGGGc------CGGGG-CGU- -5'
21503 5' -59.3 NC_004812.1 + 54669 0.66 0.76948
Target:  5'- ---cGC-CCG-CCGCCCGcGCCgCGCGu -3'
miRNA:   3'- aauuUGaGGCaGGUGGGC-CGGgGCGU- -5'
21503 5' -59.3 NC_004812.1 + 66663 0.66 0.76948
Target:  5'- -gAGGCgcgCCG-CCGCUCgcgGGCCCCGUc -3'
miRNA:   3'- aaUUUGa--GGCaGGUGGG---CCGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 151476 0.66 0.76948
Target:  5'- --cGACgccgCCGUCC-CCgggCGGCCCCGa- -3'
miRNA:   3'- aauUUGa---GGCAGGuGG---GCCGGGGCgu -5'
21503 5' -59.3 NC_004812.1 + 82842 0.66 0.76948
Target:  5'- -gGAGC-CCGcgggCACCCGGCgccCCCGCGu -3'
miRNA:   3'- aaUUUGaGGCag--GUGGGCCG---GGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 25967 0.66 0.76948
Target:  5'- --cGACgccgCCGUCC-CCgggCGGCCCCGa- -3'
miRNA:   3'- aauUUGa---GGCAGGuGG---GCCGGGGCgu -5'
21503 5' -59.3 NC_004812.1 + 59895 0.66 0.760153
Target:  5'- -cGAGC-CCuaucgCCGCCgCGGaCCCCGCGg -3'
miRNA:   3'- aaUUUGaGGca---GGUGG-GCC-GGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 101789 0.66 0.760153
Target:  5'- ---uACUCgGUCugcagCACCUGGCCCC-CAg -3'
miRNA:   3'- aauuUGAGgCAG-----GUGGGCCGGGGcGU- -5'
21503 5' -59.3 NC_004812.1 + 34725 0.66 0.760153
Target:  5'- ----cCUgCGgccCCGCCCcaGGCCCCGCc -3'
miRNA:   3'- aauuuGAgGCa--GGUGGG--CCGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 124425 0.66 0.760153
Target:  5'- cUGGACguggcCCGgaggCACCCGGUCCgCGCGg -3'
miRNA:   3'- aAUUUGa----GGCag--GUGGGCCGGG-GCGU- -5'
21503 5' -59.3 NC_004812.1 + 142120 0.66 0.760153
Target:  5'- -gAGGcCUCCGacgucaCCAUCCagGGCCCCGCc -3'
miRNA:   3'- aaUUU-GAGGCa-----GGUGGG--CCGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 149748 0.66 0.760153
Target:  5'- --cAGCUCCG-CC-CCCGGCgggCCGCc -3'
miRNA:   3'- aauUUGAGGCaGGuGGGCCGg--GGCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.