miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21511 3' -52.2 NC_004812.1 + 43386 0.66 0.989993
Target:  5'- cGGCCGCgcgcuCCGAGaugGACCgCAgcgCggCGCg -3'
miRNA:   3'- -CCGGUG-----GGCUCa--UUGG-GUaa-GaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 73904 0.66 0.989993
Target:  5'- cGGCCG-CCGAGUcgcgccAGCCCGgcuggCgguggCGCa -3'
miRNA:   3'- -CCGGUgGGCUCA------UUGGGUaa---Gaa---GCG- -5'
21511 3' -52.2 NC_004812.1 + 101759 0.66 0.989993
Target:  5'- cGCCAccCCCGGGUAgucGCCCucgUCgaaCGUc -3'
miRNA:   3'- cCGGU--GGGCUCAU---UGGGua-AGaa-GCG- -5'
21511 3' -52.2 NC_004812.1 + 136926 0.66 0.989993
Target:  5'- aGGCCGaCCGGGccGCCCucgUCccCGCg -3'
miRNA:   3'- -CCGGUgGGCUCauUGGGua-AGaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 126016 0.66 0.989993
Target:  5'- cGCCGCCCGAcc--CCCGgcgggcgcUCUUCuGCg -3'
miRNA:   3'- cCGGUGGGCUcauuGGGUa-------AGAAG-CG- -5'
21511 3' -52.2 NC_004812.1 + 73068 0.66 0.989993
Target:  5'- gGGCCACgacgaCGGGggcGCCCAgaagCgUCGCc -3'
miRNA:   3'- -CCGGUGg----GCUCau-UGGGUaa--GaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 74382 0.66 0.989993
Target:  5'- -cCCGCCCGc---GCCCGUUUgggCGCg -3'
miRNA:   3'- ccGGUGGGCucauUGGGUAAGaa-GCG- -5'
21511 3' -52.2 NC_004812.1 + 17546 0.66 0.989993
Target:  5'- gGGCCAgCCuCGAGUGcguggcguauaACCCGcagggggUCcUCGCc -3'
miRNA:   3'- -CCGGU-GG-GCUCAU-----------UGGGUa------AGaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 44639 0.66 0.989993
Target:  5'- gGGCCGCCCGccugAGCgCC--UCUaUCGCc -3'
miRNA:   3'- -CCGGUGGGCuca-UUG-GGuaAGA-AGCG- -5'
21511 3' -52.2 NC_004812.1 + 135133 0.66 0.989993
Target:  5'- gGGCgCGCgCGgucGGUGGCCCgcccaGUUCU-CGCa -3'
miRNA:   3'- -CCG-GUGgGC---UCAUUGGG-----UAAGAaGCG- -5'
21511 3' -52.2 NC_004812.1 + 60504 0.66 0.989993
Target:  5'- cGGCCACgCaGGUGGCCCcgaacggCU-CGCc -3'
miRNA:   3'- -CCGGUGgGcUCAUUGGGuaa----GAaGCG- -5'
21511 3' -52.2 NC_004812.1 + 136741 0.66 0.989993
Target:  5'- cGCCGCUgGAGacgcucaacGACCCgGUUCUguggCGCg -3'
miRNA:   3'- cCGGUGGgCUCa--------UUGGG-UAAGAa---GCG- -5'
21511 3' -52.2 NC_004812.1 + 73063 0.66 0.989993
Target:  5'- cGGCCuCCCG-GaGACCgCGcUCcUCGCg -3'
miRNA:   3'- -CCGGuGGGCuCaUUGG-GUaAGaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 57489 0.66 0.989862
Target:  5'- cGGCCACCugCGGGUccuggccGGCCUGUgggagCGCg -3'
miRNA:   3'- -CCGGUGG--GCUCA-------UUGGGUAagaa-GCG- -5'
21511 3' -52.2 NC_004812.1 + 94021 0.66 0.988624
Target:  5'- cGGCCgugggcguGCCCGGcGUGugcCCCGUgCUgCGCg -3'
miRNA:   3'- -CCGG--------UGGGCU-CAUu--GGGUAaGAaGCG- -5'
21511 3' -52.2 NC_004812.1 + 51381 0.66 0.988624
Target:  5'- cGcCCGCCCGGGUGuccuucgaagaGCCCGgggccCGCg -3'
miRNA:   3'- cC-GGUGGGCUCAU-----------UGGGUaagaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 72175 0.66 0.988624
Target:  5'- aGGCgGaCCCGG--AACCCc--CUUCGCg -3'
miRNA:   3'- -CCGgU-GGGCUcaUUGGGuaaGAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 23784 0.66 0.988624
Target:  5'- cGGCCAUCCGAcgcGUGcgcgGCuCCAUgcgCgccgCGCg -3'
miRNA:   3'- -CCGGUGGGCU---CAU----UG-GGUAa--Gaa--GCG- -5'
21511 3' -52.2 NC_004812.1 + 76614 0.66 0.988624
Target:  5'- uGGCCucggacacgGCCUGGGcGACCCGggg--CGCg -3'
miRNA:   3'- -CCGG---------UGGGCUCaUUGGGUaagaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 79943 0.66 0.988624
Target:  5'- cGGCC-CCCGAGacGCCCcugCUggugaGCu -3'
miRNA:   3'- -CCGGuGGGCUCauUGGGuaaGAag---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.