miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21511 5' -42.7 NC_004812.1 + 148884 0.68 1
Target:  5'- aCGACGGGcgCGGAUcccGGCGggCGAGCg -3'
miRNA:   3'- -GCUGCUCuaGUUUAu--UUGUgaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 125108 0.66 1
Target:  5'- gCGGCG-GAUCGGGUccGCGCUaccgGAGCc -3'
miRNA:   3'- -GCUGCuCUAGUUUAuuUGUGAg---CUUG- -5'
21511 5' -42.7 NC_004812.1 + 27662 0.66 1
Target:  5'- gGGCGGGGUUcaccugAAACAC-CGGGCu -3'
miRNA:   3'- gCUGCUCUAGuuua--UUUGUGaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 17784 0.66 1
Target:  5'- gGGCGAGAaCGGGgugGGugcgcGCACaUCGAACa -3'
miRNA:   3'- gCUGCUCUaGUUUa--UU-----UGUG-AGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 49738 0.66 1
Target:  5'- cCGACGGGGUCGGGgu--CGCggCGGGg -3'
miRNA:   3'- -GCUGCUCUAGUUUauuuGUGa-GCUUg -5'
21511 5' -42.7 NC_004812.1 + 121775 0.66 1
Target:  5'- aGGCGGGggCAGcgAGGgcCGCUUGGGCc -3'
miRNA:   3'- gCUGCUCuaGUUuaUUU--GUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 141026 0.66 1
Target:  5'- cCGACGAcGAUCGGuccGGCGCgcgauucccgCGGACg -3'
miRNA:   3'- -GCUGCU-CUAGUUuauUUGUGa---------GCUUG- -5'
21511 5' -42.7 NC_004812.1 + 141747 0.66 1
Target:  5'- gGugGAGGUCAcgcAGUu--CAUcuUCGAGCa -3'
miRNA:   3'- gCugCUCUAGU---UUAuuuGUG--AGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 81603 0.66 1
Target:  5'- gCGACGAGGUCGGc-GAGCACgccccuggccgccaGGGCg -3'
miRNA:   3'- -GCUGCUCUAGUUuaUUUGUGag------------CUUG- -5'
21511 5' -42.7 NC_004812.1 + 20280 0.66 1
Target:  5'- gGACGAGGUCGggGGUGggcGGCGCgccggCGcAGCg -3'
miRNA:   3'- gCUGCUCUAGU--UUAU---UUGUGa----GC-UUG- -5'
21511 5' -42.7 NC_004812.1 + 89688 0.66 1
Target:  5'- aCGugGAGcaggaggccAUCGAGgugguGCACUCGcGCg -3'
miRNA:   3'- -GCugCUC---------UAGUUUauu--UGUGAGCuUG- -5'
21511 5' -42.7 NC_004812.1 + 84125 0.66 1
Target:  5'- cCGGCGGGA-Cu--UAGACACcggagUCGGGCg -3'
miRNA:   3'- -GCUGCUCUaGuuuAUUUGUG-----AGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 143683 0.68 1
Target:  5'- cCGGCGA--UCGuc---GCGCUCGAGCg -3'
miRNA:   3'- -GCUGCUcuAGUuuauuUGUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 37981 0.68 1
Target:  5'- cCGACuGGAUCAGAUAGAacgccgugggguagcCGCgguccUCGAACg -3'
miRNA:   3'- -GCUGcUCUAGUUUAUUU---------------GUG-----AGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 105414 0.67 1
Target:  5'- aCGugGGGGcgCGAGgggggaagGAACGCUCGGugcGCg -3'
miRNA:   3'- -GCugCUCUa-GUUUa-------UUUGUGAGCU---UG- -5'
21511 5' -42.7 NC_004812.1 + 39542 0.67 1
Target:  5'- uCGACGGGGUgCGggccgucgcgggcGAUGAGCGgcuggugcacCUCGAACu -3'
miRNA:   3'- -GCUGCUCUA-GU-------------UUAUUUGU----------GAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 143951 0.67 1
Target:  5'- gGGCGGGGUgGGAgGAGCGCgggaUGGGCa -3'
miRNA:   3'- gCUGCUCUAgUUUaUUUGUGa---GCUUG- -5'
21511 5' -42.7 NC_004812.1 + 67862 0.66 1
Target:  5'- cCGugGAuGUCGuuGAUGGucaGCUCGAACc -3'
miRNA:   3'- -GCugCUcUAGU--UUAUUug-UGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 18488 0.66 1
Target:  5'- gGACGAGGggCGGAgGGGCG-UCGAGCc -3'
miRNA:   3'- gCUGCUCUa-GUUUaUUUGUgAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 63692 0.66 1
Target:  5'- gCGACaAGGUCAA----GCuCUCGAGCu -3'
miRNA:   3'- -GCUGcUCUAGUUuauuUGuGAGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.