miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 3' -55.5 NC_004812.1 + 108956 0.66 0.933178
Target:  5'- --gGGGGCGCgggggaucgcgggacCCGGUGGggaGGCGGCUu -3'
miRNA:   3'- auaUUCUGCG---------------GGCCACUa--CUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 58070 0.66 0.931142
Target:  5'- ----cGGCGCCCGGcGccGA-GGCCGc -3'
miRNA:   3'- auauuCUGCGGGCCaCuaCUgCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 105495 0.66 0.931142
Target:  5'- ---cAGGCGaCCGGgcccGGCGGCCGa -3'
miRNA:   3'- auauUCUGCgGGCCacuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 23608 0.66 0.931142
Target:  5'- gGUuGGGCGcCCCGGUcGUccgcGCGGCCGc -3'
miRNA:   3'- aUAuUCUGC-GGGCCAcUAc---UGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 126581 0.66 0.931142
Target:  5'- ----cGuCGCCCcGUGcAUGugGGCCa -3'
miRNA:   3'- auauuCuGCGGGcCAC-UACugCCGGc -5'
21512 3' -55.5 NC_004812.1 + 136287 0.66 0.931142
Target:  5'- -----cGCGCCCGcGUGggGGCGGUg- -3'
miRNA:   3'- auauucUGCGGGC-CACuaCUGCCGgc -5'
21512 3' -55.5 NC_004812.1 + 14454 0.66 0.931142
Target:  5'- ----uGGCGCCCGuGUGGccgGAgGGCgCGg -3'
miRNA:   3'- auauuCUGCGGGC-CACUa--CUgCCG-GC- -5'
21512 3' -55.5 NC_004812.1 + 53429 0.66 0.931142
Target:  5'- --cGAGGaGCCCGGggccgcgcUGAcGGCGGCCc -3'
miRNA:   3'- auaUUCUgCGGGCC--------ACUaCUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 19662 0.66 0.931142
Target:  5'- gGUGAGAcCGCCgGGggccgcgGGgacgagGGCGGCCc -3'
miRNA:   3'- aUAUUCU-GCGGgCCa------CUa-----CUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 37093 0.66 0.931142
Target:  5'- ---cGGAgGCCCGGggcgcccGGCGGCCc -3'
miRNA:   3'- auauUCUgCGGGCCacua---CUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 149116 0.66 0.931142
Target:  5'- gGUuGGGCGcCCCGGUcGUccgcGCGGCCGc -3'
miRNA:   3'- aUAuUCUGC-GGGCCAcUAc---UGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 71726 0.66 0.931142
Target:  5'- --gAAGuCGCUCGGgugGcgGAgGGCCa -3'
miRNA:   3'- auaUUCuGCGGGCCa--CuaCUgCCGGc -5'
21512 3' -55.5 NC_004812.1 + 71038 0.66 0.931142
Target:  5'- --gGAGcCGCUgGG-GAgGGCGGCCGc -3'
miRNA:   3'- auaUUCuGCGGgCCaCUaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 6192 0.66 0.931142
Target:  5'- ---cGGAgGCCCGGggcgcccGGCGGCCc -3'
miRNA:   3'- auauUCUgCGGGCCacua---CUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 137774 0.66 0.930626
Target:  5'- --cGAGGCGCgcgaCGGUGGcgggaucUGGCGGgCGg -3'
miRNA:   3'- auaUUCUGCGg---GCCACU-------ACUGCCgGC- -5'
21512 3' -55.5 NC_004812.1 + 115249 0.66 0.929589
Target:  5'- ----cGACGuCCCGGUGGUGcgugguugaggcguaGGCCa -3'
miRNA:   3'- auauuCUGC-GGGCCACUACug-------------CCGGc -5'
21512 3' -55.5 NC_004812.1 + 45813 0.66 0.925883
Target:  5'- ---cAGACGCCCGG-GAgcccGACGaGCgGc -3'
miRNA:   3'- auauUCUGCGGGCCaCUa---CUGC-CGgC- -5'
21512 3' -55.5 NC_004812.1 + 16669 0.66 0.925883
Target:  5'- --aGAGAaagucuaGCCCgGGUGA-GGCGGUCa -3'
miRNA:   3'- auaUUCUg------CGGG-CCACUaCUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 54570 0.66 0.925883
Target:  5'- --cGGGGCGCCgCGGgagacgGAggcgGACGaGCCa -3'
miRNA:   3'- auaUUCUGCGG-GCCa-----CUa---CUGC-CGGc -5'
21512 3' -55.5 NC_004812.1 + 13513 0.66 0.925883
Target:  5'- --cGGGGC-CCaCGGc-GUGACGGCCGg -3'
miRNA:   3'- auaUUCUGcGG-GCCacUACUGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.