miRNA display CGI


Results 1 - 20 of 591 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 5' -66.8 NC_004812.1 + 153156 0.66 0.483608
Target:  5'- -cCGcCCGCCGGGCCCGaccccCGCg-GCg -3'
miRNA:   3'- gaGCcGGCGGCCCGGGCca---GCGgaCG- -5'
21512 5' -66.8 NC_004812.1 + 28100 0.66 0.483608
Target:  5'- -aCGGCCGCCuGGGCcggcaacuggaCCGGccCGCCc-- -3'
miRNA:   3'- gaGCCGGCGG-CCCG-----------GGCCa-GCGGacg -5'
21512 5' -66.8 NC_004812.1 + 137699 0.66 0.483608
Target:  5'- -cCGGCUGCuCGcGGCCCuGUacgaGCCgGCc -3'
miRNA:   3'- gaGCCGGCG-GC-CCGGGcCAg---CGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 77187 0.66 0.483608
Target:  5'- gUCcccGCCGCCGGGCUCGaacgCgGCCUcGCu -3'
miRNA:   3'- gAGc--CGGCGGCCCGGGCca--G-CGGA-CG- -5'
21512 5' -66.8 NC_004812.1 + 99158 0.66 0.483608
Target:  5'- -aCGGCCGCCcggaGGGCCa---UGCaCUGCa -3'
miRNA:   3'- gaGCCGGCGG----CCCGGgccaGCG-GACG- -5'
21512 5' -66.8 NC_004812.1 + 154935 0.66 0.483608
Target:  5'- ---cGCCGCgggCGGGCCgCGG-CGCCgcgGCc -3'
miRNA:   3'- gagcCGGCG---GCCCGG-GCCaGCGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 153609 0.66 0.483608
Target:  5'- -aCGGCCGCCuGGGCcggcaacuggaCCGGccCGCCc-- -3'
miRNA:   3'- gaGCCGGCGG-CCCG-----------GGCCa-GCGGacg -5'
21512 5' -66.8 NC_004812.1 + 124034 0.66 0.483608
Target:  5'- ---cGCCGCgggCGGGCCgCGG-CGCCgcgGCc -3'
miRNA:   3'- gagcCGGCG---GCCCGG-GCCaGCGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 82695 0.66 0.483608
Target:  5'- --gGcGCCGCUGGGCgCCGGccgacggcggcUCGCCcgaGCc -3'
miRNA:   3'- gagC-CGGCGGCCCG-GGCC-----------AGCGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 27648 0.66 0.483608
Target:  5'- -cCGcCCGCCGGGCCCGaccccCGCg-GCg -3'
miRNA:   3'- gaGCcGGCGGCCCGGGCca---GCGgaCG- -5'
21512 5' -66.8 NC_004812.1 + 21754 0.66 0.483608
Target:  5'- gUCuGCCGCCGacgcGCCguCGGUCGCCa-- -3'
miRNA:   3'- gAGcCGGCGGCc---CGG--GCCAGCGGacg -5'
21512 5' -66.8 NC_004812.1 + 116440 0.66 0.483608
Target:  5'- -aCGGCCuGCgGGGCggCCG-UCGCgCUGUg -3'
miRNA:   3'- gaGCCGG-CGgCCCG--GGCcAGCG-GACG- -5'
21512 5' -66.8 NC_004812.1 + 141820 0.66 0.483608
Target:  5'- gCUCGGCCaugGCgCGGGUCggCGGggaCGCgaGCg -3'
miRNA:   3'- -GAGCCGG---CG-GCCCGG--GCCa--GCGgaCG- -5'
21512 5' -66.8 NC_004812.1 + 83721 0.66 0.483608
Target:  5'- cCUCGGgguuuCUGCCggggacgcGGGCCCGGcUGCC-GCc -3'
miRNA:   3'- -GAGCC-----GGCGG--------CCCGGGCCaGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 1209 0.66 0.482732
Target:  5'- gCUCGGCCgggggcggcGCCGcGggggcuccuccccGCCCGGgcggCGCCgcgGCc -3'
miRNA:   3'- -GAGCCGG---------CGGC-C-------------CGGGCCa---GCGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 32110 0.66 0.482732
Target:  5'- gCUCGGCCgggggcggcGCCGcGggggcuccuccccGCCCGGgcggCGCCgcgGCc -3'
miRNA:   3'- -GAGCCGG---------CGGC-C-------------CGGGCCa---GCGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 152033 0.66 0.478361
Target:  5'- --gGGUCGgCGGGCCCGGggguccaaggguggCGCgaGUc -3'
miRNA:   3'- gagCCGGCgGCCCGGGCCa-------------GCGgaCG- -5'
21512 5' -66.8 NC_004812.1 + 121132 0.66 0.478361
Target:  5'- --gGGUCGgCGGGCCCGGggguccaaggguggCGCgaGUc -3'
miRNA:   3'- gagCCGGCgGCCCGGGCCa-------------GCGgaCG- -5'
21512 5' -66.8 NC_004812.1 + 57351 0.66 0.478361
Target:  5'- --gGGCCGCCGgugcgugccuccGGCCCGGacggcccccgccccCGCCgacGCg -3'
miRNA:   3'- gagCCGGCGGC------------CCGGGCCa-------------GCGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 5812 0.66 0.474878
Target:  5'- --gGGCUGCgGGGCgCGGcggGCuCUGCg -3'
miRNA:   3'- gagCCGGCGgCCCGgGCCag-CG-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.